Alternatives and similar repositories for valis-hpgv

Users that are interested in valis-hpgv are comparing it to the libraries listed below

• higlass / higlass-arcs
  HiGlass track for displaying arcs between disconnected regions
  ☆10Updated 2 years ago
• higlass / clodius
  Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
  ☆39Updated 6 months ago
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆46Updated 7 months ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆107Updated 3 weeks ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 10 months ago
• kanaverse / scran.js
  Single cell analysis in Javascript
  ☆22Updated 3 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆100Updated last year
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆54Updated 3 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆30Updated 2 months ago
• brentp / cigar
  simple library for dealing with SAM cigar strings
  ☆41Updated 4 years ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated this week
• kcleal / superintervals
  Fast interval intersection library
  ☆44Updated 2 months ago
• vector-engineering / covidcg
  A COVID-19 CoV Genetics (CG) browser to inform therapeutics development
  ☆26Updated this week
• higlass / higlass-docker
  Builds a docker container wrapping higlass-server and higlass-client in nginx
  ☆31Updated 3 years ago
• JEFworks / ubit2
  User-friendly Bioinformatics Tools
  ☆18Updated 4 years ago
• brianyiktaktsui / Skymap
  High-throughput gene to knowledge mapping through massive integration of public sequencing data.
  ☆31Updated 6 years ago
• harvardinformatics / NGmerge
  Merging paired-end reads and removing adapters
  ☆30Updated 5 years ago
• hms-dbmi / cistrome-explorer
  Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling
  ☆13Updated 2 years ago
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆27Updated 2 weeks ago
• slowkow / pytabix
  Retrieve data in genomic intervals with a Python interface for tabix.
  ☆82Updated 8 years ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆28Updated last year
• GMOD / tabix-js
  Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
  ☆14Updated 2 weeks ago
• mskilab-org / gGnome.js
  ☆26Updated 2 years ago
• vierstralab / genome-tools
  Processing and plotting tools for genomics data
  ☆21Updated 3 months ago
• Oshlack / Slinker
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Updated 3 years ago
• HumanCellAtlas / sctools
  Utilities for large scale distributed single cell data processing
  ☆24Updated 4 months ago
• aidenlab / JuiceboxLegacy
  OLD REPOSITORY - Go to
  ☆31Updated 7 years ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago
• GMOD / indexedfasta-js
  Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi
  ☆12Updated last week
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated 2 years ago