therkildsen-lab / genomic-data-analysis
Pipelines for analyzing genomic or transcriptomic data
☆13Updated 11 months ago
Alternatives and similar repositories for genomic-data-analysis:
Users that are interested in genomic-data-analysis are comparing it to the libraries listed below
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆11Updated 3 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆11Updated 6 years ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Updated 4 years ago
- Scripts and resources for the haploblocks manuscript☆15Updated 4 years ago
- Killifish genomics scripts☆12Updated 3 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆20Updated 5 years ago
- ☆16Updated 2 years ago
- Suit of R-scripts to perform landscape genomic analyses☆12Updated 4 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- ☆12Updated 9 months ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- issues for semina "Data Visulization"☆12Updated last year
- ☆14Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- SNP/Genotype calling based on ANGSD && downstream analyses☆9Updated 10 years ago
- ☆16Updated 3 months ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆16Updated 4 years ago
- Scripts to convert between file formats for various analyses☆15Updated 5 months ago
- Deleterious mutation prediction pipeline☆13Updated last month
- Population genetics analyses from NGS data☆25Updated 3 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- The IntroBlocker ancestry inference algorithm☆10Updated last year
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- ☆15Updated 4 years ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆17Updated 2 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆17Updated 6 months ago
- Reconstruction of ancestral genome maps☆16Updated 6 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆19Updated 5 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago