Pipelines for analyzing genomic or transcriptomic data
☆17Feb 29, 2024Updated 2 years ago
Alternatives and similar repositories for genomic-data-analysis
Users that are interested in genomic-data-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆37Jan 21, 2026Updated 8 months ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Aug 25, 2022Updated 4 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆73Oct 24, 2025Updated 11 months ago
- Scripts and code for Kākāpō genomic data☆14Sep 4, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A course with Jupyter Notebooks for Computational Population Genetics☆10Sep 4, 2022Updated 4 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- ☆112Oct 14, 2021Updated 5 years ago
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆29Oct 6, 2026Updated last week
- ☆16May 7, 2023Updated 3 years ago
- visualization of phylogenetic output files☆15Oct 23, 2023Updated 2 years ago
- ☆19May 27, 2022Updated 4 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆14May 11, 2023Updated 3 years ago
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆17Feb 21, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆50Jun 26, 2026Updated 3 months ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 5 months ago
- Random scripts, mostly for dealing with RADseq data and DNA sequence alignments☆18Oct 2, 2025Updated last year
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 6 months ago
- A Python package with integrated lncRNA prediction methods☆13Feb 17, 2021Updated 5 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…