Alternatives and similar repositories for genomic-data-analysis

Users that are interested in genomic-data-analysis are comparing it to the libraries listed below

• therkildsen-lab / data-processing
  Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis
  ☆11Updated 3 years ago
• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆20Updated 6 years ago
• oeco28 / Cacao_Genomics
  This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes
  ☆11Updated 7 years ago
• wrf / graphphylo
  visualization of phylogenetic output files
  ☆13Updated last year
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 4 years ago
• evotools / CattleGraphGenomePaper
  Set of script for the paper on the cattle graph genome
  ☆13Updated 2 years ago
• GenisGE / evalAdmix
  ☆14Updated last year
• yexinhai / genomics-analysis-pipeline
  Some useful bioinformatics pipelines for genomics analysis
  ☆14Updated 4 years ago
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆17Updated 3 months ago
• galikbence / genome_annotation
  Pipeline for eukaryotic genome annotation based on external evidences
  ☆13Updated 2 years ago
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆19Updated 2 years ago
• Minglc / CisTrans-ECAS
  ☆10Updated last year
• evodify / genotype-files-manipulations
  Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.
  ☆10Updated 4 years ago
• caasivfbioinfo / Bol_pangenome
  ☆15Updated last year
• schneebergerlab / GameteBinning
  ☆12Updated 4 years ago
• xuechantian / Plant-LncRNA-pipline
  ☆14Updated 5 months ago
• comery / gVisualization
  issues for semina "Data Visulization"
  ☆13Updated 2 months ago
• amvarani / Plant_Annotation_TEs
  Methods and recipes for Plant Genome Annotation - Transposable Elements
  ☆20Updated 2 months ago
• Chenghong412 / sheep_introgression
  ☆11Updated 3 years ago
• rojaff / LanGen_pipeline
  Suit of R-scripts to perform landscape genomic analyses
  ☆14Updated 5 years ago
• GaoLei-bio / SV
  ☆14Updated 3 years ago
• zjnolen / PopGLen
  Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…
  ☆15Updated 3 months ago
• simonhmartin / dfs
  D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
  ☆18Updated 4 years ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• RacconC / gtftools
  ☆14Updated 2 years ago
• maiziezhoulab / LRSV_combo
  Long Read Based SV Calling Tools Analysis
  ☆14Updated last year
• ChenHuaLab / HaploSweep
  HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.
  ☆11Updated 11 months ago
• pdimens / LepWrap
  A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
  ☆13Updated 2 months ago
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆16Updated 5 years ago
• ChenHuaLab / Beta-PSMC
  ☆12Updated 5 years ago