therkildsen-lab / genomic-data-analysisView external linksLinks
Pipelines for analyzing genomic or transcriptomic data
☆17Feb 29, 2024Updated last year
Alternatives and similar repositories for genomic-data-analysis
Users that are interested in genomic-data-analysis are comparing it to the libraries listed below
Sorting:
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- visualization of phylogenetic output files☆14Oct 23, 2023Updated 2 years ago
- A course with Jupyter Notebooks for Computational Population Genetics☆10Sep 4, 2022Updated 3 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- ☆10Feb 25, 2024Updated last year
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- A Python package with integrated lncRNA prediction methods☆12Feb 17, 2021Updated 4 years ago
- ☆16May 7, 2023Updated 2 years ago
- ☆18May 27, 2022Updated 3 years ago
- Scripts and code for Kākāpō genomic data☆14Sep 4, 2023Updated 2 years ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆16Feb 21, 2022Updated 3 years ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Aug 25, 2022Updated 3 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- Random scripts, mostly for dealing with RADseq data and DNA sequence alignments☆18Oct 2, 2025Updated 4 months ago
- Statistical tools for Quantitative Genetic Analyses☆38Jan 29, 2026Updated 2 weeks ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆69Oct 24, 2025Updated 3 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 2 years ago
- Scripts to convert between file formats for various analyses☆16May 10, 2025Updated 9 months ago
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- Repository☆10Oct 23, 2024Updated last year
- ☆24Nov 9, 2017Updated 8 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- ☆18Dec 15, 2021Updated 4 years ago
- cgat-apps repository☆34Apr 9, 2025Updated 10 months ago
- ☆21Nov 15, 2024Updated last year
- ☆103Oct 14, 2021Updated 4 years ago
- ☆10Dec 2, 2025Updated 2 months ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- ☆10Jan 30, 2020Updated 6 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 2 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Jan 2, 2026Updated last month
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- Full GATK SNP calling pipeline☆23Oct 30, 2025Updated 3 months ago
- ggplot2-based Manhattan plot☆12Oct 18, 2022Updated 3 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆12Jun 21, 2024Updated last year