therkildsen-lab / data-processingLinks
Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis
☆12Updated 3 years ago
Alternatives and similar repositories for data-processing
Users that are interested in data-processing are comparing it to the libraries listed below
Sorting:
- Pipelines for analyzing genomic or transcriptomic data☆15Updated last year
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆17Updated 4 months ago
- ☆17Updated 3 years ago
- Killifish genomics scripts☆12Updated 4 years ago
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆18Updated last week
- Main scripts and commands used to analyze goat population genetic and domestication☆19Updated 6 years ago
- Scripts and resources for the haploblocks manuscript☆17Updated 5 years ago
- Course in population genomics at BiRC☆12Updated 5 months ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Updated 4 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 6 years ago
- Code and binaries related to processing haplotagging data☆15Updated 3 years ago
- Joint inference of heterozygosity rates and runs of homozygosity☆15Updated last year
- Scripts to convert between file formats for various analyses☆15Updated 4 months ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆63Updated 11 months ago
- Tools and Utilities for msmc and msmc2☆48Updated 2 months ago
- Suit of R-scripts to perform landscape genomic analyses☆13Updated 5 years ago
- issues for semina "Data Visulization"☆13Updated 3 months ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 3 years ago
- Scripts of population genomics analysis☆36Updated 7 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- ☆16Updated 5 years ago
- Population Genomics in R workshop☆12Updated last year
- R package to draw syntenic plots in 3 different styles☆42Updated last month
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆16Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago