Alternatives and similar repositories for data-processing:

Users that are interested in data-processing are comparing it to the libraries listed below

• therkildsen-lab / genomic-data-analysis
  Pipelines for analyzing genomic or transcriptomic data
  ☆13Updated 11 months ago
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆15Updated 4 years ago
• therkildsen-lab / lcwgs-simulation
  ☆16Updated 2 years ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆19Updated 2 years ago
• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆19Updated 5 years ago
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 4 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆13Updated 3 weeks ago
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆16Updated 3 weeks ago
• rojaff / LanGen_pipeline
  Suit of R-scripts to perform landscape genomic analyses
  ☆12Updated 4 years ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 5 years ago
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆16Updated last year
• ZhaoTingzju / GWAS_script
  Working on cotton resequencing
  ☆11Updated 4 years ago
• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆20Updated 5 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆49Updated 6 years ago
• clairemerot / angsd_pipeline
  ☆26Updated last year
• simonhmartin / dfs
  D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
  ☆16Updated 4 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆48Updated 3 weeks ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆30Updated 11 months ago
• evodify / genotype-files-manipulations
  Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.
  ☆10Updated 4 years ago
• HuffordLab / Wang_et_al._Demography
  Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"
  ☆17Updated 4 years ago
• nbedelman / DiscovarCompGenomics
  ☆12Updated 5 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆41Updated 5 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆26Updated 7 months ago
• grenaud / ROHan
  Joint inference of heterozygosity rates and runs of homozygosity
  ☆12Updated 5 months ago
• oeco28 / Cacao_Genomics
  This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes
  ☆11Updated 6 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated 10 months ago
• z0on / 2bRAD_denovo
  Genome-wide de novo genotyping with 2bRAD
  ☆22Updated 3 months ago
• grahamgower / genomatnn
  Predicts adaptive introgression using a CNN trained on genotype matrices.
  ☆15Updated last year
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year