ekfchan / evachan.org-Rscripts

Related projects ⓘ

Alternatives and complementary repositories for evachan.org-Rscripts

• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated last year
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆38Updated 4 years ago
• bcbc-group / CyVerese_SNP_calling_webinar
  ☆10Updated 4 years ago
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆29Updated 6 months ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆53Updated this week
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated last week
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆13Updated 4 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 3 years ago
• hemstrow / snpR
  ☆28Updated this week
• ANGSD / NgsRelate
  ☆42Updated 10 months ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆32Updated 4 years ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago
• MorrellLAB / sequence_handling
  A series of scripts to automate sequence workflows
  ☆19Updated 2 months ago
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆23Updated 2 years ago
• sguizard / DensityMap
  DensityMap is perl tool for the visualization of features density along chromosomes
  ☆17Updated 2 years ago
• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 4 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 2 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 6 years ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆24Updated 2 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆32Updated 2 years ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 8 years ago
• pievos101 / PopGenome
  An Efficient Swiss Army Knife for Population Genomic Analyses in R
  ☆31Updated 5 months ago
• sib-swiss / 2017-10-longreads-training
  ☆9Updated 7 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆23Updated 5 years ago
• z0on / GO_MWU
  Rank-based Gene Ontology analysis of gene expression data
  ☆39Updated last year
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆24Updated 6 years ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated 2 months ago
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 2 years ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 6 years ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆25Updated 2 weeks ago