Alternatives and similar repositories for shiny_popgen

Users that are interested in shiny_popgen are comparing it to the libraries listed below

• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆109Updated 2 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆34Updated 4 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆86Updated last year
• pgugger / LandscapeGenomics
  Tutorials for bioinformatics and data analysis related to landscape genomics
  ☆29Updated 6 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 3 years ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆149Updated 2 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆27Updated 3 months ago
• bodkan / slendr
  Population genetic simulations in R
  ☆61Updated 2 weeks ago
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆89Updated 4 years ago
• andrewkern / popGenMachineLearningExamples
  simple examples of using supervised machine learning for population genetics inference
  ☆39Updated 8 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆68Updated last month
• gbradburd / SpaceMix
  ☆30Updated 3 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 10 months ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆30Updated 4 years ago
• kr-colab / locator
  deep learning prediction of geographic location from individual genome sequences
  ☆52Updated 10 months ago
• Yale-EEB723 / syllabus
  ☆22Updated 6 years ago
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆20Updated 4 years ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆96Updated 3 months ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆38Updated last year
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆104Updated 3 weeks ago
• StevenMicheletti / poolparty
  Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R
  ☆21Updated 3 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆43Updated 6 years ago
• tatumdmortimer / popgen-stats
  Scripts to calculate population genetics statistics
  ☆55Updated 7 years ago
• bodkan / demografr
  A framework for simulation-based inference in evolutionary biology
  ☆26Updated last week
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆35Updated 2 years ago
• jade-cheng / ohana
  mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.
  ☆87Updated 4 years ago
• ekfchan / evachan.org-Rscripts
  Handy genetics-related R scripts
  ☆32Updated 6 years ago
• thierrygosselin / radiator
  RADseq Data Exploration, Manipulation and Visualization using R
  ☆59Updated 3 months ago
• BenjaminPeter / rangeexpansion
  ☆14Updated 8 years ago