ngs-docs / 2017-ucsc-metagenomicsLinks
Workshop materials for shotgun metagenomics
☆36Updated 8 years ago
Alternatives and similar repositories for 2017-ucsc-metagenomics
Users that are interested in 2017-ucsc-metagenomics are comparing it to the libraries listed below
Sorting:
- ☆23Updated 7 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Statistical analysis for sparse high-throughput sequencing☆70Updated 8 months ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- ☆63Updated 4 years ago
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated last year
- Nanopore data analysis in R☆40Updated 2 years ago
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆92Updated last year
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- Maximum likelihood demultiplexing☆47Updated 6 months ago
- Statistical Analysis of Metagenomic Profiles☆94Updated 5 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆72Updated 3 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 6 years ago
- A collection of command line tools for working with sequencing data☆51Updated last week
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- An experimental repo for common snakemake rules and workflows☆46Updated 10 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- A catalogue of available long read sequencing data analysis tools☆79Updated 5 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated 10 months ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆35Updated 7 years ago
- Evolutionary Transcriptomics with R☆45Updated this week
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.☆48Updated 8 years ago
- ☆35Updated last year