LANL-Bioinformatics / GOTTCHA
Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:
☆22Updated 5 years ago
Related projects: ⓘ
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 6 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 3 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- ☆19Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 5 years ago
- Read nanopore sequence reads in real-time☆13Updated 7 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆13Updated 4 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆17Updated 3 years ago
- Bioinformatics pipeline for nanopore sequencing data☆10Updated 5 years ago
- A method of assessing sequence complexity based on kmer frequencies☆26Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 3 months ago
- ☆23Updated 4 years ago
- Find Unique genomic Regions☆29Updated 2 weeks ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 10 months ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11Updated 4 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Output FASTQ summary statistics in JSON format☆29Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆23Updated 8 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 4 years ago
- Software for Nanopore Analysis☆10Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- OPAL: Open-community Profiling Assessment tooL☆26Updated 3 weeks ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- ☆10Updated this week