knights-lab / shi7Links
Auto-parameterizing QC Pipeline for Illumina sequencing runs
☆17Updated last year
Alternatives and similar repositories for shi7
Users that are interested in shi7 are comparing it to the libraries listed below
Sorting:
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 8 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated 11 months ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 5 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- A visualization tool for exploratory data analysis of metagenomic data☆37Updated 3 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Dual barcode and primer demultiplexing for MinION sequenced reads☆41Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated last month
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆17Updated 8 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- ☆23Updated 7 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- A set of tools to analyse the output from TraDIS analyses☆24Updated 2 years ago
- Just a Microbiology System (JAMS) - a suite for analyzing microbiological sequencing data for use on NIH HPC systems (Biowulf)☆25Updated last week
- ☆20Updated 8 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago