knights-lab / shi7Links
Auto-parameterizing QC Pipeline for Illumina sequencing runs
☆17Updated last year
Alternatives and similar repositories for shi7
Users that are interested in shi7 are comparing it to the libraries listed below
Sorting:
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Using kallisto for metagenomic analysis☆49Updated 9 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆32Updated 8 years ago
- ☆23Updated 7 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆17Updated 8 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆41Updated 2 years ago
- Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."☆21Updated 6 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated 2 weeks ago
- ☆20Updated 9 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Metagenomics Workshop☆28Updated 9 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated this week
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- selbal: selection of balances for microbial signatures☆32Updated 10 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Rapid and scalable homolog identification for bacterial genomes☆33Updated 6 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated 2 weeks ago
- ☆41Updated 4 years ago