MicroB3-IS / osd-analysisLinks
Repository for all Ocean Sampling Day related source code with information on how-to acquire OSD data
☆14Updated last year
Alternatives and similar repositories for osd-analysis
Users that are interested in osd-analysis are comparing it to the libraries listed below
Sorting:
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆85Updated 2 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated 2 years ago
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆211Updated 5 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆81Updated 2 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆32Updated 7 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 9 years ago
- DAS Tool☆168Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆124Updated last week
- A toolbox for comparative genomics.☆108Updated 4 years ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆47Updated this week
- FUNGuild: parsing OTUs into functional guilds☆128Updated last year
- ☆53Updated 5 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- ☆78Updated 2 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆120Updated last year
- Automatically exported from code.google.com/p/jmodeltest2☆82Updated 4 years ago
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Updated 2 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆104Updated 2 months ago
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆50Updated 4 months ago
- DDBJ Fast Annotation and Submission Tool☆84Updated 4 months ago
- Clustering cONtigs with COverage and ComposiTion☆137Updated 5 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆33Updated last year
- Best-fit model selection☆87Updated last year
- Making whole bacterial genome sequencing data analysis easy☆113Updated 9 months ago
- ☆61Updated 6 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆36Updated this week
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆110Updated 2 years ago