Repository for all Ocean Sampling Day related source code with information on how-to acquire OSD data
☆14May 14, 2024Updated last year
Alternatives and similar repositories for osd-analysis
Users that are interested in osd-analysis are comparing it to the libraries listed below
Sorting:
- Scripts for analyzing Illumina-generated environmental DNA sequence data.☆20Feb 22, 2018Updated 8 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Feb 7, 2018Updated 8 years ago
- Classifier for metagenomic sequences☆30Nov 12, 2018Updated 7 years ago
- A simple script to display stuff on a world map with R and ggplot☆17Feb 17, 2026Updated last week
- ☆23Mar 2, 2019Updated 6 years ago
- ✅ PeopleBudget is an open-source tool for hosting participatory budgets elections at the local level.☆10Oct 4, 2022Updated 3 years ago
- Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa☆41Jun 24, 2024Updated last year
- code for Numerical Ecology with R☆35Aug 7, 2018Updated 7 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆85Updated this week
- mapping files for MetaCyc pathway☆12Sep 14, 2019Updated 6 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Nov 9, 2023Updated 2 years ago
- Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions☆12Dec 18, 2025Updated 2 months ago
- Web content for Meren Lab☆11Updated this week
- EukRef curation pipeline☆13May 11, 2021Updated 4 years ago
- A QGIS plugin for creating CZML files☆13Feb 11, 2021Updated 5 years ago
- ☆11Aug 6, 2019Updated 6 years ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆12Feb 17, 2025Updated last year
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- The cdom package implements various functions used to model and calculate metrics from absorption spectra of chromophotic dissolved organ…☆12Apr 13, 2020Updated 5 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- This contains all the files and scripts necessary to participate in the FTICR-MS data analysis demonstration at the SBR SFA Community Wor…☆18Jul 8, 2020Updated 5 years ago
- ☆45Jun 27, 2023Updated 2 years ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- Analysis of Composition of Microbiomes☆11Jun 17, 2016Updated 9 years ago
- Workflow for detecting genome-wide horizontal gene transfers☆10May 29, 2018Updated 7 years ago
- This repository contains the generalized scripts necessary to perform the ecological analyses detailed within the manuscript titled, "Uni…☆17Nov 2, 2020Updated 5 years ago
- Development repo for pyani-plus (the next iteration of pyani)☆25Updated this week
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- Workshop materials for "Designing ggplots"☆14Nov 23, 2019Updated 6 years ago
- Sample search by metadata and features☆47Aug 31, 2023Updated 2 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 3 years ago
- Various scripts used at the EnvGen group, directed towards metagenomic analysis.☆15Apr 28, 2020Updated 5 years ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆15Nov 6, 2024Updated last year
- ☆11Aug 26, 2022Updated 3 years ago
- A simple tool to calculate metrics from a BAM file and filter references with uneven coverages☆22Jan 29, 2026Updated last month
- Programs and documentation for the SAMSA pipeline, version 1.0☆16Dec 16, 2019Updated 6 years ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Jun 27, 2023Updated 2 years ago
- ☆18Updated this week