mobidic / update_annovar_dbLinks
scripts to automatically update ANNOVAR db
☆18Updated 3 years ago
Alternatives and similar repositories for update_annovar_db
Users that are interested in update_annovar_db are comparing it to the libraries listed below
Sorting:
- WisecondorX — An evolved WISECONDOR☆102Updated 3 weeks ago
- ☆53Updated 2 years ago
- ☆43Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- Burden testing against public controls☆50Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆71Updated last year
- A simplified pipeline for ctDNA sequencing data analysis☆37Updated 7 years ago
- QDNAseq package for Bioconductor☆51Updated last year
- Reference data: BED files, genes, transcripts, variations.☆85Updated 7 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆89Updated 2 months ago
- Converts snpeff annotations into MAF☆11Updated last year
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆111Updated 5 months ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆20Updated last year
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆116Updated 2 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 3 weeks ago
- Microsatellite instability (MSI) detection for tumor only data.☆108Updated last year
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 10 months ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆49Updated last year
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Microsatellite Analysis for Normal-Tumor InStability☆74Updated 3 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- ☆46Updated 5 years ago
- CNV screening and annotation tool☆25Updated 8 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Updated 4 years ago
- A suite of tools for detecting expansions of short tandem repeats☆82Updated 2 years ago