Automated pipeline for whole bacterial genome analysis based on snakemake
☆12May 16, 2022Updated 4 years ago
Alternatives and similar repositories for BacterialGenomeAnalysis
Users that are interested in BacterialGenomeAnalysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆15Nov 20, 2025Updated 10 months ago
- An automated assembly pipeline for microbial genomes☆19Aug 26, 2026Updated last month
- Some examples to analyze mass spectrometry data using MALDIquant☆17Oct 13, 2022Updated 3 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 3 years ago
- Microbiome Classifier Pipeline for Pacific Biosciences 16s Data☆11Jan 22, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Confidence Estimation for Mass Spectrometry Proteomics☆16Sep 17, 2026Updated last week
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- Draw pan- and core-genome curves from proteinortho output☆14Oct 26, 2023Updated 2 years ago
- Pangenome analysis using random forests☆16Dec 9, 2025Updated 9 months ago
- PAGAN2 multiple sequence aligner☆12Sep 4, 2026Updated 3 weeks ago
- MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs)☆14Dec 7, 2016Updated 9 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Jul 16, 2024Updated 2 years ago
- ☆14May 22, 2025Updated last year
- R for Mass Spectrometry documentation☆15Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- 新东方乐词app中的词书提取,使用海词接口获取词条解释制作Anki单词卡☆20Mar 28, 2022Updated 4 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 11 months ago
- Repo for Proksee Cmd Line Tools☆30Feb 22, 2023Updated 3 years ago
- All scripts used for the analysis of the twilight of the pan-genome, and scripts available for others to apply similar analysis☆20Mar 30, 2021Updated 5 years ago
- AMR/VF LGT focused bacterial genomics analysis workflow☆28Feb 19, 2026Updated 7 months ago
- Collection of scripts for bacterial genomics☆49Dec 6, 2019Updated 6 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Feb 12, 2016Updated 10 years ago
- A community collection of bioinformatic analyses for anyone to learn and adapt☆20Sep 2, 2026Updated 3 weeks ago
- Code for 'Topological and kernel-based microbial phenotype prediction from MALDI-TOF mass spectra'☆12Apr 11, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆67Sep 1, 2026Updated 3 weeks ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆57Mar 2, 2026Updated 6 months ago
- omics data analysis using clusterProfiler ;)☆15Jun 6, 2024Updated 2 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆24Aug 27, 2026Updated 3 weeks ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Sep 8, 2026Updated 2 weeks ago
- ☆15Aug 15, 2026Updated last month
- Analytics tool that applies Natural Language Processing (NLP) and Machine Learning (ML), such as concept extraction, idea classification,…☆10Dec 7, 2022Updated 3 years ago
- IslandPath standalone software☆38Nov 7, 2023Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆43Jul 23, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆41May 1, 2023Updated 3 years ago
- A script that gets data from the Twitter real-time API, passes it to a message-queue (e.g. RabbitMQ) and stores tweets into MongoDB☆11Apr 20, 2017Updated 9 years ago
- a toolbox for metabolomic data analysis, visualization and ‘omic’ integration☆13Jun 21, 2018Updated 8 years ago
- ☆65Jan 25, 2024Updated 2 years ago
- ☆16Jun 21, 2023Updated 3 years ago
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 8 months ago
- ☆14Jun 26, 2026Updated 3 months ago