denisbeslic / BacterialGenomeAnalysisLinks
Automated pipeline for whole bacterial genome analysis based on snakemake
☆12Updated 3 years ago
Alternatives and similar repositories for BacterialGenomeAnalysis
Users that are interested in BacterialGenomeAnalysis are comparing it to the libraries listed below
Sorting:
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆13Updated 3 months ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆27Updated 6 months ago
- A simple pipeline for bacterial assembly and quality control☆17Updated this week
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆22Updated 2 weeks ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- Frequently used commands in Bioinformatics☆21Updated last month
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆17Updated 7 years ago
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆19Updated last week
- ☆11Updated last year
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 9 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Repository for general metagenomics Nextflow pipeline☆23Updated last month
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 5 months ago
- Genomic sequence aligner☆31Updated 2 weeks ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- http://huttenhower.sph.harvard.edu/waafle☆22Updated 10 months ago
- ☆18Updated 4 years ago
- Influenza genome analysis Nextflow workflow☆30Updated last month
- The Microbial Co-occurrence Network Explorer☆21Updated 2 years ago
- scripts for microbiome analysis☆11Updated last year
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆33Updated 3 weeks ago
- A package to annotate protein sequences☆60Updated 8 months ago
- ☆26Updated 2 years ago
- MAG Circularization Method☆32Updated 3 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- Code for detecting genomic island insertions in clades of microbes.☆19Updated 2 years ago
- Quality control plotting for long reads☆10Updated last year