denisbeslic / BacterialGenomeAnalysisLinks
Automated pipeline for whole bacterial genome analysis based on snakemake
☆12Updated 3 years ago
Alternatives and similar repositories for BacterialGenomeAnalysis
Users that are interested in BacterialGenomeAnalysis are comparing it to the libraries listed below
Sorting:
- Draw pan- and core-genome curves from proteinortho output☆10Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆25Updated last week
- The Microbial Co-occurrence Network Explorer☆21Updated 2 years ago
- Frequently used commands in Bioinformatics☆21Updated last month
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Updated 6 years ago
- ☆19Updated 5 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Updated 3 years ago
- A tool to analyze telomeric reads from WGS or telobait-capture long-read sequencing data☆10Updated last year
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Updated 3 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Updated 3 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆19Updated 2 weeks ago
- http://huttenhower.sph.harvard.edu/waafle☆22Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆33Updated last year
- ☆11Updated 10 months ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆22Updated 3 months ago
- ☆20Updated 3 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Updated 5 years ago
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆23Updated last month
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 2 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 11 months ago
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆13Updated 2 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 4 months ago
- Pipeline for major biological analyses.☆36Updated 3 years ago
- A nextflow pipeline for performing bacterial RNA-Seq data analysis.☆12Updated 3 months ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 2 weeks ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- Code for de novo discovery of viral families in virome data☆16Updated last year
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆17Updated 7 years ago