Alternatives and similar repositories for BacterialGenomeAnalysis

Users that are interested in BacterialGenomeAnalysis are comparing it to the libraries listed below

• dsarov / MGAP

  View on GitHub
  An automated assembly pipeline for microbial genomes
  ☆19Jan 15, 2026Updated last month
• grbot / 16SrRNA-hex-tutorial

  View on GitHub
  16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.
  ☆11Jan 15, 2021Updated 5 years ago
• isabelschober / proteinortho_curves

  View on GitHub
  Draw pan- and core-genome curves from proteinortho output
  ☆10Oct 26, 2023Updated 2 years ago
• jpearl01 / mcsmrt

  View on GitHub
  Microbiome Classifier Pipeline for Pacific Biosciences 16s Data
  ☆11Jan 22, 2024Updated 2 years ago
• yinlabniu / HGT-Finder

  View on GitHub
  Program for finding horizontal gene transfer using BLAST result
  ☆11May 26, 2023Updated 2 years ago
• BorgwardtLab / maldi_PIKE

  View on GitHub
  Code for 'Topological and kernel-based microbial phenotype prediction from MALDI-TOF mass spectra'
  ☆11Apr 11, 2022Updated 3 years ago
• YoukaiFromAccounting / skandiver

  View on GitHub
  skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…
  ☆13Nov 20, 2025Updated 2 months ago
• rformassspectrometry / book

  View on GitHub
  R for Mass Spectrometry documentation
  ☆14Nov 19, 2025Updated 2 months ago
• mwang87 / GNPS_MASST

  View on GitHub
  ☆14Feb 4, 2026Updated last week
• YuLab-SMU / clusterProfiler_protocol

  View on GitHub
  omics data analysis using clusterProfiler ;)
  ☆15Jun 6, 2024Updated last year
• Noble-Lab / crema

  View on GitHub
  Confidence Estimation for Mass Spectrometry Proteomics
  ☆13May 28, 2025Updated 8 months ago
• almeidasilvaf / syntenet

  View on GitHub
  An R package to infer and analyze synteny networks from protein sequences
  ☆36Jul 23, 2025Updated 6 months ago
• phipsonlab / SuperCellCyto

  View on GitHub
  SuperCell for Cytometry data
  ☆13Oct 14, 2025Updated 4 months ago
• LANL-Bioinformatics / MeGAMerge

  View on GitHub
  MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs)
  ☆14Dec 7, 2016Updated 9 years ago
• sgibb / MALDIquantExamples

  View on GitHub
  Some examples to analyze mass spectrometry data using MALDIquant
  ☆17Oct 13, 2022Updated 3 years ago
• kwanjeeraw / metabox

  View on GitHub
  a toolbox for metabolomic data analysis, visualization and ‘omic’ integration
  ☆13Jun 21, 2018Updated 7 years ago
• MRC-Epid / MetabolomicsGWAS_INTERVAL_EPICNorfolk

  View on GitHub
  This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemica…
  ☆18Jul 15, 2022Updated 3 years ago
• rformassspectrometry / MsCoreUtils

  View on GitHub
  Core Utils for Mass Spectrometry Data
  ☆17Dec 15, 2025Updated last month
• tseemann / scripts

  View on GitHub
  Miscellaneous Perl scripts from 20 years in microbial bioinformatics
  ☆18Jul 16, 2024Updated last year
• mccoy-lab / LD-PGTA

  View on GitHub
  Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage se…
  ☆18Oct 10, 2022Updated 3 years ago
• robinschmid / microbe_masst

  View on GitHub
  Using MASST or fastMASST, adding metadata onto a tree ontology for microbes
  ☆24Feb 4, 2026Updated last week
• janepipistrelle / bacterial_GWAS_tutorial

  View on GitHub
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Feb 12, 2016Updated 10 years ago
• CCICB / introme

  View on GitHub
  Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation
  ☆22Dec 18, 2025Updated last month
• ghoresh11 / twilight

  View on GitHub
  All scripts used for the analysis of the twilight of the pan-genome, and scripts available for others to apply similar analysis
  ☆19Mar 30, 2021Updated 4 years ago
• vappiah / bacterial-genomics-tutorial

  View on GitHub
  ☆63Jan 25, 2024Updated 2 years ago
• aleimba / bac-genomics-scripts

  View on GitHub
  Collection of scripts for bacterial genomics
  ☆48Dec 6, 2019Updated 6 years ago
• nf-core / bactmap

  View on GitHub
  A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
  ☆62Nov 20, 2025Updated 2 months ago
• LANL-Bioinformatics / GOTTCHA

  View on GitHub
  Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:
  ☆23Jan 29, 2019Updated 7 years ago
• proksee-project / proksee-cmd

  View on GitHub
  Repo for Proksee Cmd Line Tools
  ☆26Feb 22, 2023Updated 2 years ago
• beiko-lab / arete

  View on GitHub
  AMR/VF LGT focused bacterial genomics analysis workflow
  ☆28Apr 5, 2025Updated 10 months ago
• XikunHan / metabolomicsR

  View on GitHub
  Tools for metabolomic data
  ☆35Oct 4, 2024Updated last year
• petemeng / bioinformatics

  View on GitHub
  bioinformatics for peter
  ☆11Apr 8, 2025Updated 10 months ago
• PayneLab / ProteomicsEducation

  View on GitHub
  ☆40Jan 20, 2026Updated 3 weeks ago
• wenbostar / metaX

  View on GitHub
  metaX: a flexible and comprehensive software for processing omics data.
  ☆26Jun 16, 2023Updated 2 years ago
• marcpaga / nanopore_benchmark

  View on GitHub
  ☆30Jul 28, 2025Updated 6 months ago
• merenlab / oligotyping

  View on GitHub
  Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa
  ☆41Jun 24, 2024Updated last year
• moshi4 / COGclassifier

  View on GitHub
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆81May 3, 2025Updated 9 months ago
• Cyanivde / technion-anki

  View on GitHub
  Anki decks for Technion courses
  ☆12Apr 26, 2024Updated last year
• mxndrwgrdnr / UCB_CYPLAN255_2024

  View on GitHub
  Course repo for material related to CYPLAN 255 at UC Berkeley, Spring 2024
  ☆11May 7, 2024Updated last year