Alternatives and similar repositories for BacterialGenomeAnalysis

Users that are interested in BacterialGenomeAnalysis are comparing it to the libraries listed below

• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆22Updated last year
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆31Updated 8 months ago
• segrelab / MiCoNE
  The Microbial Co-occurrence Network Explorer
  ☆21Updated last year
• muzafferarikan / gNOMO2
  gNOMO2 allows integrated multi-omics analyses of microbiomes
  ☆15Updated last year
• YDaiLab / MiMeNet
  ☆18Updated 4 years ago
• lmlui / Jorg
  MAG Circularization Method
  ☆32Updated 3 years ago
• YoukaiFromAccounting / skandiver
  skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…
  ☆13Updated last month
• wclose / viralMetagenomicsPipeline
  Pipeline for metagenomic community analysis using DNA isolated from virus-like particles
  ☆13Updated 5 years ago
• amromics / panta
  Pan-genome Analysis
  ☆12Updated 4 months ago
• BeatsonLab-MicrobialGenomics / micropipe
  A pipeline for high-quality bacterial genome construction using ONT sequencing
  ☆39Updated 3 years ago
• NancyZxll / temperate-phage-active-prophage-detection
  detect temperate phage (active prophage) in assembled bacterial genome sequences
  ☆14Updated 3 years ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆35Updated 3 years ago
• saima-tithi / FastViromeExplorer
  FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer
  ☆14Updated 6 years ago
• GCA-VH-lab / uorf4u
  uorf4u is a bioinformatics tool for conserved upstream ORF annotation.
  ☆13Updated last week
• li-bw18 / iVirP
  Integrative virome pipeline
  ☆13Updated 10 months ago
• isabelschober / proteinortho_curves
  Draw pan- and core-genome curves from proteinortho output
  ☆10Updated last year
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆39Updated last year
• Chartiza / Microbiome
  scripts for microbiome analysis
  ☆11Updated last year
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated last week
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆47Updated 9 months ago
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆64Updated 2 months ago
• biobakery / waafle
  http://huttenhower.sph.harvard.edu/waafle
  ☆20Updated 9 months ago
• RogerLab / Eukfinder
  Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data
  ☆27Updated 5 months ago
• Ecogenomics / gtdb-species-clusters
  Toolkit for establishing, updating, and validating GTDB species clusters
  ☆20Updated 3 months ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆29Updated 8 months ago
• NBISweden / nbis-meta
  A snakemake workflow for metagenomic projects
  ☆14Updated 2 years ago
• redsnic / WGA-LP
  A pipeline for whole genome assembly
  ☆16Updated 3 years ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆28Updated 5 months ago
• ebi-pf-team / genome-properties
  ☆13Updated 5 years ago
• leoisl / bacterial_assembly_pipeline
  ☆11Updated last year