grenaud / deMLLinks
Maximum likelihood demultiplexing
☆49Updated 9 months ago
Alternatives and similar repositories for deML
Users that are interested in deML are comparing it to the libraries listed below
Sorting:
- ☆96Updated 3 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆89Updated last year
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- BigWig and BAM utilities☆99Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- A collection of command line tools for working with sequencing data☆52Updated 2 weeks ago
- ☆63Updated 4 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 7 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- A catalogue of available long read sequencing data analysis tools☆83Updated 2 months ago
- parallelized blat with multi-threads support☆53Updated 10 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- An awk-like VCF parser☆56Updated last year
- ☆78Updated 11 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- Evolutionary Transcriptomics with R☆49Updated 3 weeks ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 2 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated this week
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago