grenaud / deML
Maximum likelihood demultiplexing
☆46Updated last month
Alternatives and similar repositories for deML:
Users that are interested in deML are comparing it to the libraries listed below
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Rank-based Gene Ontology analysis of gene expression data☆41Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 weeks ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆82Updated 4 months ago
- Nanopore data analysis in R☆39Updated last year
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆62Updated 4 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- ☆23Updated 6 years ago
- ☆94Updated 2 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆89Updated 3 years ago
- Evolutionary Transcriptomics with R☆42Updated last week
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 8 months ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆54Updated 4 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆46Updated 7 years ago
- de novo virus assembler of Illumina paired reads☆55Updated 3 years ago
- ☆78Updated 11 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆73Updated 10 months ago
- ☆47Updated 4 months ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago