knights-lab / SHOGUN
SHallow shOtGUN profiler
☆54Updated 2 years ago
Alternatives and similar repositories for SHOGUN:
Users that are interested in SHOGUN are comparing it to the libraries listed below
- Compare different differential abundance and expression methods☆50Updated 2 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 2 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆45Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆53Updated 4 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 7 months ago
- ☆23Updated 6 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated last month
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆50Updated 2 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 8 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated last week
- ☆17Updated 2 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆57Updated 5 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 8 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- ☆51Updated this week
- Ley Lab MetaGenome Profiler DataBase generator☆48Updated 2 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 5 months ago
- gutSMASH☆54Updated 3 weeks ago
- ☆32Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆27Updated last year
- StaG Metagenomic Workflow Collaboration☆29Updated 4 months ago
- Metagenomics-related extended functionalities to samtools☆19Updated last year
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆36Updated this week
- Database of genomes integrated from the gut microbiome and other environments☆44Updated last year
- Protein Alignment and Detection Interface☆61Updated 9 months ago
- Metagenomics Workshop☆28Updated 8 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year