JTFouquier / ghost-treeLinks
creating hybrid-gene phylogenetic trees for diversity analyses
☆30Updated 3 years ago
Alternatives and similar repositories for ghost-tree
Users that are interested in ghost-tree are comparing it to the libraries listed below
Sorting:
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 2 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated 2 years ago
- Tools for visualising microbial community amplicon data☆70Updated last month
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated 2 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆32Updated 8 months ago
- diversity estimation under ecological networks☆83Updated 5 months ago
- ☆79Updated 2 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 5 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- functions for analyzing phyloseq data☆28Updated 10 months ago
- micca - MICrobial Community Analysis☆19Updated 5 years ago
- Miscellaneous functions for metagenomic analysis.☆51Updated this week
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated 2 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆32Updated 4 months ago
- Various functions for analysis of microbial community data☆47Updated 3 months ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆59Updated 3 years ago
- functions to analyse sanger sequencing reads in R☆104Updated last month
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated last year
- phylogenetics tools for linux (and other mostly posix compliant) computers☆122Updated 11 months ago
- ☆23Updated 7 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 3 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- R scripts for performing co-occurrence analyses☆35Updated 10 years ago