JTFouquier / ghost-treeLinks
creating hybrid-gene phylogenetic trees for diversity analyses
☆30Updated 3 years ago
Alternatives and similar repositories for ghost-tree
Users that are interested in ghost-tree are comparing it to the libraries listed below
Sorting:
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated last month
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated 2 years ago
- Tools for visualising microbial community amplicon data☆70Updated last month
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated last year
- diversity estimation under ecological networks☆83Updated 4 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 7 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 4 months ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated 2 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- ☆78Updated 2 years ago
- Various functions for analysis of microbial community data☆47Updated 2 months ago
- functions for analyzing phyloseq data☆28Updated 10 months ago
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Updated 7 years ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Updated 3 weeks ago
- Reconstruction of transmission trees using genomic data☆68Updated 2 years ago
- A toolkit for analyzing and visualizing phylogenetic placement data☆63Updated last month
- functions to analyse sanger sequencing reads in R☆104Updated 3 weeks ago
- Miscellaneous functions for metagenomic analysis.☆51Updated 3 weeks ago
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- ☆23Updated 7 years ago
- JAMP - Just Another Metabarcoding Pipeline☆37Updated 3 years ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆122Updated 10 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Automatically exported from code.google.com/p/jmodeltest2☆82Updated 4 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated 3 weeks ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago