Alternatives and similar repositories for ebi-metagenomics

Users that are interested in ebi-metagenomics are comparing it to the libraries listed below

• aghozlane / masque
  Metagenomic AnalySis with QUantitative pipEline
  ☆12Updated 6 years ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆90Updated last year
• edamame-course / 2015-tutorials
  tutorials for 2015 EDAMAME
  ☆24Updated 7 years ago
• edamame-course / Metagenome
  ☆23Updated 6 years ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆69Updated 5 months ago
• rdpstaff / classifier
  RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
  ☆57Updated 2 years ago
• pachterlab / metakallisto
  Using kallisto for metagenomic analysis
  ☆50Updated 8 years ago
• MVesuviusC / primerTree
  PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs
  ☆52Updated last year
• jts / nanocorrect
  Experimental pipeline for correcting nanopore reads
  ☆39Updated 7 years ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆47Updated 3 months ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated last year
• zhaoyanswill / RAPSearch2
  Reduced Alphabet based Protein similarity Search
  ☆40Updated 4 years ago
• katholt / plotTree
  ☆67Updated 8 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• ngs-docs / 2017-ucsc-metagenomics
  Workshop materials for shotgun metagenomics
  ☆36Updated 7 years ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated last year
• vsbuffalo / scythe
  A 3'-end adapter contaminant trimmer
  ☆94Updated 7 years ago
• spholmes / F1000_workflow
  ☆43Updated 7 years ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆54Updated 3 years ago
• smithlabcode / preseq
  Software for predicting library complexity and genome coverage in high-throughput sequencing.
  ☆82Updated 6 months ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆71Updated 3 years ago
• MG-RAST / MG-RAST-Tools
  Repository of script tools, examples, and contributed code for using the MG-RAST API
  ☆26Updated 4 years ago
• Oshlack / Lace
  Building SuperTranscripts: A linear representation of transcriptome data
  ☆67Updated 4 years ago
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 6 years ago
• mw55309 / Kraken_db_install_scripts
  Updated Kraken DB install scripts to cope with new-ish NCBI structure
  ☆46Updated 8 years ago
• najoshi / sabre
  ☆62Updated 4 years ago
• hsgweon / pipits
  Automated pipeline for analyses of fungal ITS from the Illumina
  ☆31Updated 2 weeks ago
• caporaso-lab / mockrobiota
  A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.
  ☆81Updated 6 years ago
• arq5x / bedtools-protocols
  ☆78Updated 11 years ago