jsilve24 / philrLinks
Phylogenetic Isometric Log Ratio
☆19Updated last year
Alternatives and similar repositories for philr
Users that are interested in philr are comparing it to the libraries listed below
Sorting:
- ☆28Updated last year
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- Simple R utilities for working with HMMER☆19Updated last year
- Talk to the NCBI EUtils☆22Updated 5 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 4 years ago
- diversity estimation under ecological networks☆83Updated 6 months ago
- Tools for visualising microbial community amplicon data☆71Updated 3 months ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated 2 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Species richness with high diversity☆68Updated 6 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆30Updated 9 months ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Miscellaneous functions for metagenomic analysis.☆53Updated last month
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated 2 years ago
- accessory functions for processing microbial community data☆12Updated 3 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 6 months ago
- ☆43Updated 8 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Updated 3 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Updated 3 years ago
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆77Updated this week
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 3 months ago
- ☆20Updated 5 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 6 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last month
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆59Updated 3 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 7 years ago