jsilve24 / philrLinks
Phylogenetic Isometric Log Ratio
☆19Updated 10 months ago
Alternatives and similar repositories for philr
Users that are interested in philr are comparing it to the libraries listed below
Sorting:
- Speedy versions of phyloseq functions☆48Updated last year
- ☆27Updated last year
- diversity estimation under ecological networks☆84Updated last month
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 9 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Species richness with high diversity☆67Updated 3 weeks ago
- Tools for visualising microbial community amplicon data☆67Updated 2 weeks ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 4 months ago
- Miscellaneous functions for metagenomic analysis.☆51Updated last week
- Simple R utilities for working with HMMER☆20Updated 11 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- selbal: selection of balances for microbial signatures☆32Updated 6 months ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Updated 6 years ago
- Robust Aitchison PCA from sparse count data☆36Updated 3 years ago
- Talk to the NCBI EUtils☆22Updated 4 years ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 6 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 weeks ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- functions for analyzing phyloseq data☆28Updated 7 months ago
- ☆20Updated 5 years ago