mibwurrepo / Microbial-bioinformatics-introductory-course-Material-2018
Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL
☆26Updated 4 years ago
Related projects: ⓘ
- Code used in MiCE 8992 Spring 2016☆43Updated 8 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 3 years ago
- Compare different differential abundance and expression methods☆49Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated last year
- ☆35Updated 6 years ago
- A set of R scripts for the analysis of microbial profiles☆40Updated 4 months ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆28Updated last year
- Workshop materials for shotgun metagenomics☆36Updated 7 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆69Updated 2 years ago
- Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data☆14Updated 6 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- ☆23Updated 6 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆29Updated 3 years ago
- Analysis of (gut) microbiome in Qiime2 and R.☆14Updated 3 weeks ago
- Quantitative Insights Into Microbial Ecology - parsing and plotting functions for R☆18Updated 7 years ago
- SHallow shOtGUN profiler☆54Updated 2 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆50Updated 11 months ago
- Statistical analysis for sparse high-throughput sequencing☆65Updated 6 months ago
- Microbiome analysis☆47Updated this week
- ☆20Updated 4 years ago
- ☆21Updated 4 years ago
- RNA-seq workflow: exploratory analysis and differential expression☆69Updated 10 months ago
- A comprehensive and customizable R package for microbiome analysis.☆20Updated last year
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆12Updated 3 months ago
- R shiny app for interactive microbiome analysis☆51Updated 7 months ago
- Speedy versions of phyloseq functions☆45Updated 5 months ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆57Updated 2 years ago
- Student website repo for 2015/2016 Canadian Bioinformatics Workshops☆34Updated last year