mibwurrepo / Microbial-bioinformatics-introductory-course-Material-2018Links
Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL
☆29Updated 5 years ago
Alternatives and similar repositories for Microbial-bioinformatics-introductory-course-Material-2018
Users that are interested in Microbial-bioinformatics-introductory-course-Material-2018 are comparing it to the libraries listed below
Sorting:
- Code used in MiCE 8992 Spring 2016☆43Updated 9 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆26Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- R shiny app for interactive microbiome analysis☆55Updated last month
- Statistical analysis for sparse high-throughput sequencing☆69Updated 7 months ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- ☆23Updated 5 years ago
- Compare different differential abundance and expression methods☆50Updated 3 years ago
- ☆41Updated 7 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆34Updated 6 years ago
- Workshop materials for shotgun metagenomics☆36Updated 8 years ago
- ☆23Updated 7 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆38Updated 9 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆58Updated 2 years ago
- ☆15Updated 2 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated last year
- Speedy versions of phyloseq functions☆48Updated last year
- An R package for microbial community analysis in an environmental context☆67Updated 4 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- Genome wide orthology inference and dNdS estimation☆95Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- SHallow shOtGUN profiler☆54Updated 3 years ago
- ☆13Updated last year
- A comprehensive and customizable R package for microbiome analysis.☆23Updated last month
- functions to analyse sanger sequencing reads in R☆101Updated 4 months ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago