Alternatives and similar repositories for MCB185-2025

Users that are interested in MCB185-2025 are comparing it to the libraries listed below

• TranslationManchester / bioinformatics-training-collection

  View on GitHub
  https://www.translation.manchester.ac.uk/training/
  ☆15Nov 8, 2023Updated 2 years ago
• julie-forman-kay-lab / LLPhyScore

  View on GitHub
  An interpretable machine learning algorithm to predict disordered protein phase separation based on biophysical interactions
  ☆13Aug 2, 2022Updated 3 years ago
• emiraldi / infTRN_lassoStARS

  View on GitHub
  Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS
  ☆15May 3, 2022Updated 3 years ago
• GordonLab / riesling-pipeline

  View on GitHub
  RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)
  ☆10Jun 28, 2018Updated 7 years ago
• apcamargo / pydustmasker

  View on GitHub
  Python library for identification and masking of low-complexity regions in nucleotide sequences
  ☆10Jan 23, 2026Updated 3 weeks ago
• xmliu01 / Uncovering-the-TRN-involved-in-boosting-wheat-regeneration-and-transformation

  View on GitHub
  Code used in article "Uncovering the transcriptional regulatory network involved in boosting wheat regeneration and transformation".
  ☆12Mar 21, 2023Updated 2 years ago
• odb9402 / CNNPeaks

  View on GitHub
  The ChIP-Seq peak calling algorithm using convolution neural networks
  ☆15Jan 18, 2021Updated 5 years ago
• seqcode / Bichrom

  View on GitHub
  Interpretable bimodal network for transcription factors binding site prediction
  ☆10Jun 29, 2023Updated 2 years ago
• YutingPKU / AnalysisPipeline-NGS

  View on GitHub
  ☆12Dec 15, 2020Updated 5 years ago
• linlabcode / CRC

  View on GitHub
  ☆11May 4, 2021Updated 4 years ago
• yiliao1022 / TADEvoDrosophila

  View on GitHub
  Code for TAD_SV project
  ☆11Mar 16, 2022Updated 3 years ago
• sirajulsalekin / DeepSNR

  View on GitHub
  Base-pair resolution detection of transcription factor binding site by deep deconvolutional network
  ☆10Sep 12, 2017Updated 8 years ago
• getzlab / CLUMPS-PTM

  View on GitHub
  CLUMPS adapted to post-translational modifications.
  ☆10May 22, 2025Updated 8 months ago
• studyxiao / pdf_translator

  View on GitHub
  提取 PDF 文件中的文本，使用 OpenAI 进行翻译，并将翻译结果写入 txt 文件中。
  ☆12Jun 10, 2023Updated 2 years ago
• sb-ncbr / AlphaCharges

  View on GitHub
  𝛂Charges: A tool for the quick calculation of partial atomic charges for protein structures from AlphaFold DB
  ☆12Dec 16, 2025Updated 2 months ago
• Guido497 / phase-separation

  View on GitHub
  ☆15Sep 14, 2021Updated 4 years ago
• andreasKroepelin / membrane_adhesion

  View on GitHub
  Seminar talk on a paper about phase separation due to membrane adhesion
  ☆14Jan 11, 2021Updated 5 years ago
• NIGMS / DNA-Methylation-Sequencing-Analysis-with-WGBS

  View on GitHub
  In this module, you will learn how to download raw sequence data, calculate differentially methylated regions, and run a canonical methyl…
  ☆16Jun 6, 2025Updated 8 months ago
• scRNA-tools / 1000-tools-paper

  View on GitHub
  Code and analysis for the 1000 tools paper
  ☆11Nov 12, 2021Updated 4 years ago
• lhy0322 / BertSNR

  View on GitHub
  BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…
  ☆12May 27, 2025Updated 8 months ago
• const-ae / Neural_Network_DNA_Demo

  View on GitHub
  Jupyter Notebook to demonstrate the use of Neural Networks for Transcription Factor Binding Site Prediction
  ☆13Jun 20, 2017Updated 8 years ago
• younglab / CRCmapper

  View on GitHub
  CRCmapper: map core regulatory circuitry
  ☆14Nov 23, 2020Updated 5 years ago
• younglab / ROSE

  View on GitHub
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆17Aug 12, 2022Updated 3 years ago
• Xieeeee / Droplet-Hi-C

  View on GitHub
  🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript
  ☆15Feb 6, 2026Updated last week
• DagmarIlz / SETH

  View on GitHub
  ProtT5 (Transformer) embeddings used for residue wise disorder prediction in proteins
  ☆11Mar 11, 2024Updated last year
• smlmbrt / SimilarityRegression

  View on GitHub
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Oct 7, 2019Updated 6 years ago
• linlabbcm / rose2

  View on GitHub
  ☆13Oct 7, 2019Updated 6 years ago
• zhongmicai / Hic_tools_collection

  View on GitHub
  ☆12Jul 19, 2019Updated 6 years ago
• OSCA-source / OSCA.advanced

  View on GitHub
  Advanced steps of the OSCA book
  ☆14Nov 19, 2025Updated 2 months ago
• landau-lab / Gotcha

  View on GitHub
  Pipeline for processing of GoT-ChA genotyping data and downstream analysis
  ☆15Mar 17, 2025Updated 11 months ago
• YuBinLab-QUST / DeepSTF

  View on GitHub
  DeepSTF: Predicting transcription factor binding sites by interpretable deep neural networks combining sequence and shape
  ☆11Mar 16, 2023Updated 2 years ago
• ngs-docs / ngs-notebooks

  View on GitHub
  ☆30Aug 9, 2013Updated 12 years ago
• CABSEL / SINCERITIES

  View on GitHub
  SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…
  ☆14Oct 16, 2017Updated 8 years ago
• nickeubank / practicaldatascience_book

  View on GitHub
  ☆22Updated this week
• ykai16 / Lollipop

  View on GitHub
  A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions
  ☆17Nov 7, 2018Updated 7 years ago
• mdozmorov / RNA-seq

  View on GitHub
  RNA-seq analysis scripts
  ☆16Jan 8, 2026Updated last month
• zechuanchen / NGS-

  View on GitHub
  该存储库，主要存放根据自己所掌握的NGS差异表达分析技术方法为主，具体的实验以及方案设计等将不会存放在此存储库。
  ☆15May 19, 2020Updated 5 years ago
• Howardhuang98 / Pointer_network

  View on GitHub
  Pointer networks 指针网络解决旅行商问题，基于tensorflow2。附带文章详解与代码注释。
  ☆10Dec 1, 2021Updated 4 years ago
• rraadd88 / chrov

  View on GitHub
  🧬Genomes to proteins, multi-level visualization library
  ☆14Nov 23, 2025Updated 2 months ago