Notes on ChIP-seq and other-seq-related tools
☆26Feb 6, 2026Updated 3 weeks ago
Alternatives and similar repositories for ChIP-seq_notes
Users that are interested in ChIP-seq_notes are comparing it to the libraries listed below
Sorting:
- ☆10Apr 30, 2019Updated 6 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 3 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 8 years ago
- RNA-seq analysis scripts☆16Jan 8, 2026Updated last month
- Data science in R notes☆15Apr 28, 2025Updated 10 months ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Aug 19, 2020Updated 5 years ago
- ATAC-seq processing pipeline☆34Apr 8, 2022Updated 3 years ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Aug 25, 2017Updated 8 years ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆204Feb 2, 2026Updated 3 weeks ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Dec 18, 2022Updated 3 years ago
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Apr 10, 2021Updated 4 years ago
- A high-performance search engine for large-scale genomic interval datasets☆19Sep 1, 2021Updated 4 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- Links to ATAC-seq analysis tools☆77Aug 24, 2021Updated 4 years ago
- ☆19Aug 29, 2025Updated 6 months ago
- Snakemake tutorial materials☆19Mar 9, 2020Updated 5 years ago
- ATACseqQC tutorials for BioC 2019 workshop☆19Jul 28, 2020Updated 5 years ago
- A continually expanding collection of microbiome analysis tools☆18Feb 24, 2022Updated 4 years ago
- Bioinformatics and genomics resources☆85Jan 5, 2026Updated last month
- Notes on single-cell Hi-C technologies, tools, and data☆87Oct 19, 2024Updated last year
- RNAseq analysis in R workshop, originally taught: http://combine-australia.github.io/2016-05-11-RNAseq/☆24Dec 1, 2020Updated 5 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆64Nov 14, 2025Updated 3 months ago
- Atac-seq QC matrix☆22Jun 4, 2024Updated last year
- Brain-related -omics data☆27Jul 25, 2024Updated last year
- ☆57Feb 13, 2026Updated 2 weeks ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆26Nov 17, 2022Updated 3 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆30Nov 21, 2025Updated 3 months ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Apr 3, 2020Updated 5 years ago
- Ultraperformant reimplementation of SICER☆59Dec 1, 2025Updated 3 months ago
- Augmented interval list (AIList): a novel data structure for efficient genomic interval search☆23Aug 29, 2022Updated 3 years ago
- A continually expanding collection of cancer genomics notes and data☆117Feb 6, 2026Updated 3 weeks ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 5 years ago
- Notes on SNP-related tools and genome variation analysis☆28Aug 30, 2025Updated 6 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Jul 18, 2023Updated 2 years ago
- Detecting sites of genomic enrichment☆199May 8, 2023Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Aug 8, 2024Updated last year
- IDR☆30Mar 30, 2023Updated 2 years ago
- ☆211Aug 15, 2025Updated 6 months ago
- ChIP-seq analysis notes from Ming Tang☆842Aug 5, 2024Updated last year