burstein-lab / genomic-nlp
☆24Updated 7 months ago
Alternatives and similar repositories for genomic-nlp:
Users that are interested in genomic-nlp are comparing it to the libraries listed below
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆132Updated last week
- MGnify genome analysis pipeline☆105Updated last month
- Local version of the virus identification and analysis web server (tool set)☆49Updated 2 weeks ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated last week
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆48Updated 2 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- ☆69Updated last month
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆19Updated 2 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆61Updated 4 months ago
- A toolkit for prokaryotic comparative genomics☆47Updated 3 months ago
- Bioinformatics tool for Locus Visualisation☆101Updated last month
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆48Updated 3 weeks ago
- ☆27Updated 3 months ago
- PHANOTATE: a tool to annotate phage genomes.☆74Updated 4 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆54Updated 8 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆35Updated 7 months ago
- Metagenome analysis using the Kraken software suite☆31Updated 2 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆30Updated 8 months ago
- ☆12Updated last year
- Viral protein family functional prediction using protein language models☆19Updated 10 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Bioinformatic Tools for study Evolution of metabolic diversity☆33Updated last year
- Analyses in R and Python Using curatedMetagenomicData☆31Updated 3 weeks ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆97Updated this week
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- Machine-learning-based general bacterial promoter prediction tool.☆45Updated last year
- A package to annotate protein sequences☆56Updated 2 months ago
- ☆49Updated last year
- viralVerify: viral contig verification tool☆68Updated 3 years ago
- Woltka: a versatile meta'omic data classifier☆74Updated 3 weeks ago