burstein-lab / genomic-nlpLinks
☆25Updated 9 months ago
Alternatives and similar repositories for genomic-nlp
Users that are interested in genomic-nlp are comparing it to the libraries listed below
Sorting:
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆57Updated 10 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆140Updated last week
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆49Updated 4 months ago
- ☆50Updated last year
- Bioinformatics tool for Locus Visualisation☆106Updated 3 weeks ago
- ☆71Updated last month
- Local version of the virus identification and analysis web server (tool set)☆54Updated last month
- Analyses in R and Python Using curatedMetagenomicData☆31Updated 2 months ago
- MGnify genome analysis pipeline☆106Updated last week
- Fast and flexible ORF finder☆69Updated 3 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆61Updated 6 months ago
- ☆11Updated 2 months ago
- ☆30Updated 5 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆68Updated last month
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆22Updated 2 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- A toolkit for prokaryotic comparative genomics☆49Updated 4 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Follow up to Grace Blackwell's 661k dataset, for 2023☆105Updated 2 weeks ago
- This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the …☆14Updated 2 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆21Updated 3 months ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- ☆32Updated 3 months ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆17Updated 6 months ago
- PHANOTATE: a gene caller for phages.☆76Updated 6 months ago
- Machine-learning-based general bacterial promoter prediction tool.☆47Updated last year
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- UFCG: Universal Fungal Core Genes☆33Updated 4 months ago
- A package to annotate protein sequences☆58Updated 3 months ago