A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology
☆42Dec 8, 2022Updated 3 years ago
Alternatives and similar repositories for PathFlowAI
Users that are interested in PathFlowAI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Whole Slide Digital Pathology Image Tissue Localization☆45Oct 3, 2023Updated 2 years ago
- Don't mix, match! Simple utilities for improved registration of Histopathology Whole Slide Images.☆11Oct 11, 2020Updated 5 years ago
- This repository contains an implementation of a deep learning Mask R-CNN algorithm for nuclei segmentation from whole slide images of tis…☆18Nov 10, 2019Updated 6 years ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆273Dec 23, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Digital Pathology Whole Slide Image Analysis Toolbox☆54Apr 2, 2023Updated 3 years ago
- Released code for the paper 'End-to-end Multiple Instance Learning for Whole-Slide Cytopathology of Urothelial Carcinoma'☆10Nov 24, 2021Updated 4 years ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆79Jan 9, 2023Updated 3 years ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands Cancer Institute☆30Aug 9, 2026Updated last month
- Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area☆51Apr 8, 2021Updated 5 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆166Jul 25, 2024Updated 2 years ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆14Apr 30, 2021Updated 5 years ago
- A set of codes to classify H&E slides using deep learning☆29Mar 9, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Mar 19, 2020Updated 6 years ago
- ☆349Nov 21, 2021Updated 4 years ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆30May 21, 2024Updated 2 years ago
- Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma sli…☆516Jun 7, 2024Updated 2 years ago
- A Fast Whole-slide image Annotation Tool (FWAT) for conducting painless studies requiring annotations on whole-slide images.☆11Jun 22, 2018Updated 8 years ago
- ☆59Jan 18, 2022Updated 4 years ago
- List of academic institutes/companies working on computer-based digital pathology image analysis☆46Jul 17, 2026Updated 2 months ago
- Data and code to accompany our Nature publication☆49May 3, 2022Updated 4 years ago
- ☆21Apr 16, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Apr 28, 2024Updated 2 years ago
- H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net☆10Jul 30, 2024Updated 2 years ago
- Train a model to predict gene expression from histology slides.☆111Jul 6, 2022Updated 4 years ago
- WSICS☆30Apr 19, 2019Updated 7 years ago
- ☆27Nov 28, 2022Updated 3 years ago
- Official code for "Improving Self-supervised Learning with Hardness-aware Dynamic Curriculum Learning: An Application to Digital Patholog…☆17Oct 15, 2021Updated 4 years ago
- Benchmarking of deep learning and other segmentation methods for H&E images☆11Jul 6, 2023Updated 3 years ago
- Tools for tissue image stain normalisation and augmentation in Python 3☆347May 8, 2021Updated 5 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆330Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- source code of Inter-MIL: self-interactive multi-instance learning☆17Aug 1, 2023Updated 3 years ago
- Python Whole Slide Image Preprocessing☆303Nov 15, 2022Updated 3 years ago
- Unofficial implementation for ScanNet (a fast WSI prediction method) in PyTorch.☆21Oct 3, 2023Updated 2 years ago
- Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medic…☆61Mar 5, 2022Updated 4 years ago
- A whole-slide image reader for TensorFlow☆25Jul 27, 2026Updated last month
- Probabilistic single-individual haplotyping☆10Mar 15, 2019Updated 7 years ago
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆746Oct 27, 2023Updated 2 years ago