jlevy44 / PathFlowAI
A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology
☆40Updated 2 years ago
Alternatives and similar repositories for PathFlowAI:
Users that are interested in PathFlowAI are comparing it to the libraries listed below
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Updated 2 years ago
- Survival Convolutional Neural Networks☆68Updated last year
- Handling whole-slide images with region-level annotations.☆10Updated 6 years ago
- Whole Slide Digital Pathology Image Tissue Localization☆44Updated last year
- Data and code to accompany our Nature publication☆44Updated 2 years ago
- Python scripts for automatic Whole-Slide Image preprocessing.☆36Updated 3 years ago
- Full package for applying deep learning to virtual slides.☆68Updated 6 years ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆75Updated 4 years ago
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆36Updated 4 years ago
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Updated 5 years ago
- ☆22Updated last year
- Re-stained whole slide image alignment☆32Updated last year
- Delete the label from a whole-slide image☆63Updated 3 years ago
- A Python library for deep learning on whole-slide images☆51Updated 3 years ago
- HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings…☆28Updated 3 years ago
- This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei…☆27Updated 2 years ago
- ☆23Updated 4 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆79Updated 2 years ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆23Updated 4 years ago
- ☆20Updated 2 years ago
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆51Updated 4 years ago
- Pipeline for computational pathology☆34Updated last year
- A set of codes to classify H&E slides using deep learning☆29Updated 3 years ago
- A pan-cancer platform for mutation prediction from routine histology☆68Updated 3 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆68Updated 2 months ago
- A pipeline to segment tissue from the background in histological images☆68Updated last year
- Python 3 library for the augmentation & normalization of H&E images☆52Updated 2 years ago
- HCC_Deep_learning☆19Updated 4 years ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆48Updated last year
- WSICS☆30Updated 5 years ago