Spatial Simulation of Tumor Growth
☆14Feb 24, 2017Updated 9 years ago
Alternatives and similar repositories for VirtualTumorEvolution
Users that are interested in VirtualTumorEvolution are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 3 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Code for deep learning-based glioma/tumor growth models☆27Nov 30, 2021Updated 4 years ago
- UVA Bioconnector Workshops☆14Jul 11, 2016Updated 10 years ago
- Tumor growth modeling toolkit. Tumor growth numerical solvers.☆17Oct 13, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R package to plot maps of clone distributions in somatic evolution☆20Aug 3, 2026Updated 3 months ago
- 🦀 Tumor growth simulation in C++/R☆20Jun 22, 2026Updated 4 months ago
- DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data☆34May 1, 2025Updated last year
- A deme-based, spatially explicit model of intra-tumour population genetics☆21Jan 28, 2025Updated last year
- tugHall: a simulator of cancer cell evolution based on the hallmarks of cancer, linked to the mutational states of tumor-related genes. T…☆13Dec 11, 2023Updated 2 years ago
- ☆13May 13, 2024Updated 2 years ago
- ☆11May 27, 2025Updated last year
- Clonal structure identification through penalizing pairwise differences☆11Sep 29, 2026Updated last month
- Course materials for the IBioIC Introduction to Bioinformatics training course☆12Jun 4, 2017Updated 9 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Scripts used for the ACT paper☆12May 6, 2021Updated 5 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆17Oct 11, 2021Updated 5 years ago
- Sub-muscle volume tracker for Hevy, open source. Hevy tracks muscle groups coarsely ("chest", "shoulders"). HevyMap pulls in your workout…☆23Aug 19, 2026Updated 2 months ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago
- A framework to infer mutational signatures in cancer over time☆57Jul 9, 2019Updated 7 years ago
- ☆12Sep 27, 2026Updated last month
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 6 years ago
- A computational framework for bulk RNA-seq deconvolution☆11Dec 3, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An implementation for "Robust Semantic Segmentation of Brain Tumor Regions from 3D MRIs."☆10Aug 26, 2020Updated 6 years ago
- A python module designed to reduce your brain load while accessing FreeSurfer brain surface and morphometry data files of single subjects…☆10Oct 11, 2026Updated 3 weeks ago
- Tools for image processing, brain segmentation and evaluation of glioblastoma growth models☆14Updated this week
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- Official repo for "Advances in Radiance Field for Dynamic Scene: From Neural Field to Gaussian Field"☆13Sep 19, 2025Updated last year
- dN/dS methods to quantify selection in cancer and somatic evolution☆243Aug 25, 2026Updated 2 months ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- TOP results by CONfident efFECT Sizes.☆15Dec 9, 2024Updated last year
- ☆14Jul 8, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆17Mar 11, 2024Updated 2 years ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 6 years ago
- TF analysis from epigenetic and Hi-C data☆19Apr 1, 2025Updated last year
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 6 months ago
- SPRUCE: Somatic Phylogeny Reconstruction using Combinatorial Enumeration☆14Jun 6, 2018Updated 8 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆34Feb 18, 2026Updated 8 months ago
- A Julia package for extracting mutation signatures using topic models☆20Feb 23, 2022Updated 4 years ago