cancersysbio / VirtualTumorEvolutionLinks
Spatial Simulation of Tumor Growth
☆14Updated 8 years ago
Alternatives and similar repositories for VirtualTumorEvolution
Users that are interested in VirtualTumorEvolution are comparing it to the libraries listed below
Sorting:
- A framework to infer mutational signatures in cancer over time☆55Updated 6 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- A Julia package for extracting mutation signatures using topic models☆19Updated 3 years ago
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago
- A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.☆16Updated last year
- scNMT-seq gastrulation☆42Updated 2 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- ☆41Updated 7 years ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆48Updated last year
- Decomposition-based peak identification, which find peaks across a large number of TSS (transcription starting site) profiles☆15Updated 8 years ago
- Automated marker-based annotation of cell types☆13Updated 3 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆23Updated 5 months ago
- Marker gene selection from scRNA-seq data☆15Updated 5 years ago
- List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS☆31Updated 6 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Phenome Exome Association and Correlation Of Key phenotypes☆29Updated 4 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆54Updated 2 months ago
- eQTLHap: a comprehensive eQTL analysis tool.☆11Updated 4 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- ☆18Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆66Updated 2 years ago