cytofkit: an integrated flow/mass cytometry data analysis pipeline
☆61Dec 17, 2020Updated 5 years ago
Alternatives and similar repositories for cytofkit
Users that are interested in cytofkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆26May 7, 2022Updated 4 years ago
- R package for working with CyToF data☆26May 11, 2020Updated 6 years ago
- R package for pre-processing of mass and flow cytometry data☆48Sep 6, 2022Updated 4 years ago
- Cytometry dATa anALYsis Tools☆75Apr 28, 2026Updated 6 months ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆75Dec 13, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆18Apr 17, 2024Updated 2 years ago
- Rphenograph: R implementation of the PhenoGraph algorithm☆54Jun 8, 2020Updated 6 years ago
- Citrus Development Code☆31Apr 14, 2024Updated 2 years ago
- bead-based normalization of mass cytometry data☆13May 26, 2018Updated 8 years ago
- A binary tree algorithm for automatic gating in cytometry analysis☆11Jul 26, 2025Updated last year
- Histology Topography Cytometry Analysis Toolbox☆69Mar 23, 2026Updated 7 months ago
- flowLearn: Fast and precise identification and quality checking of cell populations in flow cytometry☆12Feb 15, 2018Updated 8 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆70Oct 24, 2020Updated 6 years ago
- Spatial transcriptomics analyses and decoding in R☆27Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Subpopulation detection in high-dimensional single-cell data☆141Oct 22, 2020Updated 6 years ago
- An R package for Meta-analysis of Cytometry Data☆13Jul 27, 2020Updated 6 years ago
- ☆19Apr 5, 2024Updated 2 years ago
- A framework around Tensorflow-Keras that makes it easy to train and evaluate any deep learning architecture on imaging flow cytometry dat…☆13Dec 8, 2022Updated 3 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆59Sep 2, 2026Updated 2 months ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆49Feb 15, 2017Updated 9 years ago
- Core flow cytometry infrastructure☆61May 27, 2026Updated 5 months ago
- ☆39Mar 24, 2023Updated 3 years ago
- Parallel opt-SNE implementation with Python wrapper☆37Jun 23, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Viscello for Visualization of Single Cell Data☆27Oct 5, 2024Updated 2 years ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆15Feb 7, 2024Updated 2 years ago
- ☆32Dec 29, 2023Updated 2 years ago
- ☆19Mar 15, 2017Updated 9 years ago
- scaffold☆18Aug 13, 2018Updated 8 years ago
- A tutorial for the analysis of high-dimensional flow cytometry data☆28Aug 28, 2019Updated 7 years ago
- BEER: Batch EffEct Remover for single-cell data☆26Jan 9, 2025Updated last year
- R library to normalize cytometry data☆41Jul 7, 2026Updated 3 months ago
- A data-centric flow/mass cytometry automated analysis framework☆43Jan 22, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Complex Heatmaps Using Base Graphics☆17Mar 29, 2026Updated 7 months ago
- SPADE: Spanning Tree Progression of Density Normalized Events☆49Aug 23, 2016Updated 10 years ago
- Scalable spatial omics in the browser for hundreds of samples at once | 10x, IMC, IF, H&E, CosMX, & more | https://rakaia.io/☆73Updated this week
- ☆11Apr 6, 2022Updated 4 years ago
- SPADEVizR: an R package for Visualization, Analysis and Integration of SPADE results.☆17Dec 5, 2023Updated 2 years ago
- Out-of-Core Principal Component Analysis☆19Dec 25, 2017Updated 8 years ago
- ☆15Updated this week