JinmiaoChenLab / cytofkit
cytofkit: an integrated flow/mass cytometry data analysis pipeline
☆57Updated 4 years ago
Alternatives and similar repositories for cytofkit:
Users that are interested in cytofkit are comparing it to the libraries listed below
- Explore and share your scRNAseq clustering results☆50Updated last year
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆66Updated last year
- A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data☆27Updated 4 years ago
- Linear trajectory inference for single-cell RNA-seq☆59Updated last year
- Using self-organizing maps for visualization and interpretation of cytometry data☆27Updated last month
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 4 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆103Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆66Updated 9 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆61Updated 3 years ago
- ☆55Updated 4 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆94Updated last year
- ☆61Updated 3 years ago
- An R interface to enrichR☆92Updated 3 months ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 8 months ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆103Updated last year
- R package for robust clustering of single cell RNA sequencing data☆39Updated last year
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆93Updated 7 months ago
- Mouse cell atlas☆59Updated 5 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 4 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆104Updated 2 years ago
- ☆60Updated 5 years ago
- Cell type pipes for R☆51Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Cytometry dATa anALYsis Tools☆68Updated 5 months ago
- R package for semi-supervised single-cell data integration☆81Updated last month
- An r package that works as a wrapper to homologene☆45Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆110Updated last week