JinmiaoChenLab / cytofkitLinks
cytofkit: an integrated flow/mass cytometry data analysis pipeline
☆58Updated 4 years ago
Alternatives and similar repositories for cytofkit
Users that are interested in cytofkit are comparing it to the libraries listed below
Sorting:
- A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data☆28Updated 4 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆28Updated 3 months ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- Linear trajectory inference for single-cell RNA-seq☆59Updated last year
- Cytometry dATa anALYsis Tools☆68Updated last month
- Explore and share your scRNAseq clustering results☆50Updated last year
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Rphenograph: R implementation of the PhenoGraph algorithm☆48Updated 5 years ago
- ☆55Updated 4 years ago
- Clone of the Bioconductor repository for the scran package.☆42Updated 9 months ago
- R package for semi-supervised single-cell data integration☆82Updated last month
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 6 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆103Updated last year
- ☆37Updated 8 years ago
- Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cyt…☆19Updated this week
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆104Updated last year
- R Package for Single-Cell Dataset Processing and Visualization☆63Updated 3 years ago
- Toolkit for Single-Cell Velocity☆56Updated 5 months ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- An R-based interface for loom files☆66Updated 4 years ago
- An R interface to enrichR☆92Updated 4 months ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- ☆55Updated 4 months ago
- ☆61Updated 5 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- Create stacked violin plot☆49Updated 3 years ago
- Normalize CITEseq Data☆66Updated 2 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆70Updated 11 months ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆72Updated last month