R package for differential discovery analyses in high-dimensional cytometry data
☆25Feb 8, 2025Updated last year
Alternatives and similar repositories for diffcyt
Users that are interested in diffcyt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Apr 17, 2024Updated 2 years ago
- Cytometry dATa anALYsis Tools☆75Apr 28, 2026Updated 3 weeks ago
- c++ library for representing and interacting the gated cytometry data structure☆14Jan 29, 2025Updated last year
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 4 years ago
- ☆19Mar 15, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A GatingML Interface for Cross Platform Cytometry Data Sharing☆35Feb 10, 2026Updated 3 months ago
- Representation Learning for detection of phenotype-associated cell subsets☆68Oct 24, 2020Updated 5 years ago
- Rphenograph: R implementation of the PhenoGraph algorithm☆53Jun 8, 2020Updated 5 years ago
- ☆38Mar 24, 2023Updated 3 years ago
- The files and presentation from the Cytometry Core Facility flow cytometry data analysis course in R☆25Sep 6, 2019Updated 6 years ago
- ☆25May 7, 2022Updated 4 years ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆32Dec 9, 2021Updated 4 years ago
- Code for the paper on t-SNE with variable degree of freedom☆25Aug 5, 2020Updated 5 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 7 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Robust Integration of Single-Cell Cytometry Datasets☆34Apr 29, 2026Updated 3 weeks ago
- SPADE: Spanning Tree Progression of Density Normalized Events☆49Aug 23, 2016Updated 9 years ago
- Kernel k Nearest Neighbors in R☆17Apr 20, 2026Updated last month
- Introduction to Python Programming☆11Mar 31, 2020Updated 6 years ago
- ☆34Jan 22, 2026Updated 3 months ago
- R package for working with CyToF data☆27May 11, 2020Updated 6 years ago
- ☆15Jan 16, 2024Updated 2 years ago
- R package for pre-processing of mass and flow cytometry data☆47Sep 6, 2022Updated 3 years ago
- Open-source ImageJ plugin to quantify cardiomyocyte and cardiac muscle contraction in vitro and in vivo☆15Apr 16, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Benchmarking pipeline for single-cell perturbation prediction tools☆31Jul 11, 2025Updated 10 months ago
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Mar 4, 2022Updated 4 years ago
- Huge-scale, high-performance flow cytometry clustering in Julia☆36Nov 3, 2025Updated 6 months ago
- An R package to produce full spectrum flow cytometry plots outside the acquisition software.☆11May 9, 2023Updated 3 years ago
- Differential Expression with Capture Efficiency adjustmeNT☆15Jan 3, 2023Updated 3 years ago
- Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data☆12Jun 30, 2022Updated 3 years ago
- A repo to reproduce the experiments in the YACHT manuscript☆12Nov 2, 2023Updated 2 years ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 10 years ago
- Single-Cell Inference of Class Switch Recombination☆22Feb 11, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- an R package for deep mining gene co-expression networks in multi-trait expression data☆22Jan 23, 2026Updated 3 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆14Aug 17, 2023Updated 2 years ago
- scaffold☆18Aug 13, 2018Updated 7 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 8 years ago
- A package that provides data analysis pipeline for flow cytometry.☆83Mar 12, 2026Updated 2 months ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 5 years ago
- collections of tools for cytometry data analysis☆14Jul 9, 2020Updated 5 years ago