lmweber / diffcytLinks
R package for differential discovery analyses in high-dimensional cytometry data
☆20Updated 5 months ago
Alternatives and similar repositories for diffcyt
Users that are interested in diffcyt are comparing it to the libraries listed below
Sorting:
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆44Updated last year
- Clone of the Bioconductor repository for the scRNAseq package.☆28Updated 5 months ago
- Multi-omics studies are available here☆51Updated 3 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆14Updated 4 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆45Updated 8 years ago
- Topics In Data Science and Bioinformatics☆78Updated last year
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆23Updated last year
- Exploring dimension-reduced embeddings☆110Updated 3 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- Citrus Development Code☆31Updated last year
- Brings SingleCellExperiment objects to the tidyverse☆36Updated this week
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆105Updated last year
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 6 years ago
- ☆66Updated last month
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- A GatingML Interface for Cross Platform Cytometry Data Sharing☆31Updated 4 months ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆21Updated last year
- R package of techniques for comparing clusterings of single-cell sequencing data☆38Updated last year
- ☆95Updated last year
- This R package for performing module repertoire analyses and generating fingerprint representations☆16Updated 3 years ago
- flowWorkspace☆45Updated 4 months ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Full annotation using shape-constrained trees☆25Updated last year
- ☆16Updated last year
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Differential Correlation across Ranked Samples☆12Updated 2 years ago