Alternatives and similar repositories for premessa

Users that are interested in premessa are comparing it to the libraries listed below

• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆112Updated 5 years ago
• AllonMKlein / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆86Updated 6 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆98Updated 4 years ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆61Updated 5 years ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆45Updated last year
• kharchenkolab / dropEst
  Pipeline for initial analysis of droplet-based single-cell RNA-seq data
  ☆95Updated 3 years ago
• sansomlab / tenx
  Pipelines for the analysis of 10x single-cell RNA-sequencing data
  ☆58Updated 2 years ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆64Updated 2 years ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆95Updated 5 years ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆67Updated 5 years ago
• AllonKleinLab / SPRING
  ☆69Updated 7 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆111Updated 2 years ago
• dynverse / dyno
  Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
  ☆185Updated 4 years ago
• Teichlab / cellity
  ☆37Updated 9 years ago
• cole-trapnell-lab / garnett
  Automated cell type classification
  ☆114Updated 11 months ago
• rcannood / SCORPIUS
  Linear trajectory inference for single-cell RNA-seq
  ☆61Updated 2 weeks ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆86Updated 7 months ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆140Updated last year
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆80Updated 5 months ago
• hms-dbmi / scde
  R package for analyzing single-cell RNA-seq data
  ☆177Updated last year
• MarioniLab / DropletUtils
  Clone of the Bioconductor repository for the DropletUtils package.
  ☆63Updated 3 months ago
• iaconogi / bigSCale2
  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
  ☆107Updated 2 years ago
• AllonKleinLab / SPRING_dev
  ☆71Updated last year
• cssmillie / ulcerative_colitis
  ☆63Updated 5 years ago
• HelenaLC / CATALYST
  Cytometry dATa anALYsis Tools
  ☆70Updated 3 weeks ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆93Updated 10 months ago
• romanhaa / Cerebro
  Visualization of scRNA-seq data.
  ☆99Updated 3 years ago
• JEFworks-Lab / HoneyBADGER
  HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
  ☆99Updated 4 years ago
• maggiecrow / MetaNeighbor
  ☆48Updated 7 years ago
• drisso / bioc2016singlecell
  Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor
  ☆80Updated 9 years ago