Alternatives and similar repositories for premessa

Users that are interested in premessa are comparing it to the libraries listed below

• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆112Updated 4 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆95Updated 4 years ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆131Updated 9 months ago
• rpolicastro / scProportionTest
  ☆71Updated last year
• ggjlab / scMCA
  Mouse cell atlas
  ☆62Updated 5 years ago
• kharchenkolab / dropEst
  Pipeline for initial analysis of droplet-based single-cell RNA-seq data
  ☆92Updated 3 years ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆64Updated last year
• maggiecrow / MetaNeighbor
  ☆49Updated 7 years ago
• AllonMKlein / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆85Updated 6 years ago
• rcannood / SCORPIUS
  Linear trajectory inference for single-cell RNA-seq
  ☆60Updated last year
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆43Updated 11 months ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆105Updated 2 years ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆86Updated 2 months ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆95Updated 4 years ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆66Updated 5 years ago
• cole-trapnell-lab / garnett
  Automated cell type classification
  ☆111Updated 7 months ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆70Updated last year
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 7 months ago
• AllonKleinLab / SPRING_dev
  ☆69Updated last year
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆120Updated 2 weeks ago
• AllonKleinLab / SPRING
  ☆69Updated 7 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆107Updated 2 years ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆93Updated 8 months ago
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆49Updated 3 years ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated last year
• Teichlab / cellity
  ☆37Updated 9 years ago
• iaconogi / bigSCale2
  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
  ☆104Updated 2 years ago
• 10XGenomics / loupeR
  Convert Seurat objects to 10x Genomics Loupe files.
  ☆132Updated last month
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆123Updated 3 months ago
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆76Updated last month