Using self-organizing maps for visualization and interpretation of cytometry data
☆69Dec 13, 2023Updated 2 years ago
Alternatives and similar repositories for FlowSOM
Users that are interested in FlowSOM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆10Oct 31, 2023Updated 2 years ago
- ☆19Mar 15, 2017Updated 9 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆35Apr 10, 2026Updated 2 months ago
- Interactive Cytometry Data Analysis☆69Mar 18, 2026Updated 2 months ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆48Feb 15, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Core flow cytometry infrastructure☆59May 27, 2026Updated 2 weeks ago
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆61Dec 17, 2020Updated 5 years ago
- A package that provides data analysis pipeline for flow cytometry.☆84Mar 12, 2026Updated 2 months ago
- Complex Heatmaps Using Base Graphics☆16Mar 29, 2026Updated 2 months ago
- Peak-based selection of high quality cytometry data☆21Feb 23, 2026Updated 3 months ago
- ☆12Feb 24, 2026Updated 3 months ago
- FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data☆34Jun 16, 2022Updated 3 years ago
- ☆15Jan 16, 2024Updated 2 years ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆47Sep 29, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆26Apr 18, 2016Updated 10 years ago
- R library to normalize cytometry data☆40Jan 16, 2026Updated 4 months ago
- Fast embedding ot multidimensional datasets, great for cytometry data☆26Mar 8, 2026Updated 3 months ago
- R package for differential discovery analyses in high-dimensional cytometry data☆25Feb 8, 2025Updated last year
- ☆25May 7, 2022Updated 4 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- Image classification for imaging flow cytometry.☆29Jan 3, 2025Updated last year
- A python package for visualization and analysis of high-throughput flow cytometry data☆127Jul 27, 2023Updated 2 years ago
- ☆17Apr 17, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Optimal gating strategies for flow and mass cytometry.☆16Nov 5, 2025Updated 7 months ago
- c++ library for representing and interacting the gated cytometry data structure☆14Jan 29, 2025Updated last year
- ☆34May 29, 2026Updated last week
- NExt generation Analysis Toolbox☆14Oct 18, 2015Updated 10 years ago
- SCIFIO ImageIO plugin for ITK☆16Apr 23, 2026Updated last month
- R package for working with CyToF data☆27May 11, 2020Updated 6 years ago
- Parallel opt-SNE implementation with Python wrapper☆37Jun 23, 2022Updated 3 years ago
- A framework around Tensorflow-Keras that makes it easy to train and evaluate any deep learning architecture on imaging flow cytometry dat…☆12Dec 8, 2022Updated 3 years ago
- Machine Learning Workflow for Imaging Flow Cytometry (IFC)☆12Nov 15, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Interactive Visualizations with rCharts and Shiny☆21Sep 13, 2015Updated 10 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆68Oct 24, 2020Updated 5 years ago
- scaffold☆18Aug 13, 2018Updated 7 years ago
- collections of tools for cytometry data analysis☆14Jul 9, 2020Updated 5 years ago
- Subpopulation detection in high-dimensional single-cell data☆142Oct 22, 2020Updated 5 years ago
- Bioinformatic approach to identify functional transcription factor binding motifs☆11May 16, 2022Updated 4 years ago
- ☆74May 28, 2025Updated last year