SofieVG / FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry data
☆62Updated last year
Alternatives and similar repositories for FlowSOM:
Users that are interested in FlowSOM are comparing it to the libraries listed below
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated last year
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆45Updated 8 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Multi-omics studies are available here☆51Updated 2 years ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 4 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- Signac☆25Updated 2 years ago
- Geometry-preserving random sampling☆80Updated 5 months ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆18Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 3 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 7 months ago
- Documentation for the cellxgene product☆16Updated 2 years ago
- Gene group activity utility functions for Scanpy☆71Updated 3 months ago
- Using BCR and expression for sequence embedding☆21Updated this week
- ☆37Updated 8 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆71Updated 2 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- cTPnet Package☆25Updated 2 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆43Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- MASC: Mixed-effects Association testing for Single Cells☆15Updated 3 years ago
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆57Updated 4 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆57Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 10 months ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆22Updated 4 months ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Multiview Intercellular SpaTial modeling framework☆52Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 10 months ago