SofieVG / FlowSOMLinks
Using self-organizing maps for visualization and interpretation of cytometry data
☆65Updated last year
Alternatives and similar repositories for FlowSOM
Users that are interested in FlowSOM are comparing it to the libraries listed below
Sorting:
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆45Updated 8 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆32Updated 4 months ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆58Updated 4 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated 11 months ago
- ☆25Updated 9 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated last month
- Using BCR and expression for sequence embedding☆24Updated this week
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆17Updated 5 years ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆27Updated 8 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Signac☆25Updated 2 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- ☆22Updated 5 years ago
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆58Updated 4 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- Full annotation using shape-constrained trees☆25Updated last year
- Topics In Data Science and Bioinformatics☆78Updated last year
- Code and documentation for the curation of cellxgene datasets☆47Updated this week
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Geometry-preserving random sampling☆89Updated 9 months ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆76Updated 4 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago