ParkerICI / vite
R package for analysis of single-cell data using graphs
☆10Updated last year
Related projects: ⓘ
- A tutorial for the analysis of high-dimensional flow cytometry data☆25Updated 5 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆13Updated last year
- kallisto index tag extractor☆20Updated 5 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆20Updated 4 years ago
- Figure depicting the breadth of multimodal scRNA-seq technologies☆14Updated 5 years ago
- Inference of switch-like differential expression along single-cell trajectories☆19Updated 6 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 5 years ago
- An analytics package for single cell data☆20Updated 2 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 2 months ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆41Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆31Updated 2 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆26Updated 3 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 5 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 4 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆13Updated 3 years ago
- ☆12Updated 2 years ago
- Algorithms for single-cell analysis☆28Updated 3 years ago
- See: https://www.iscb.org/ismb2018/3511#am1☆17Updated 6 years ago
- Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz☆12Updated 4 years ago
- ☆29Updated 5 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆20Updated last year
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 5 years ago
- ☆33Updated 5 years ago
- ☆14Updated 5 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 2 years ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆14Updated 3 years ago