nolanlab / spade
SPADE: Spanning Tree Progression of Density Normalized Events
☆46Updated 8 years ago
Related projects: ⓘ
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆44Updated 7 years ago
- Citrus Development Code☆31Updated 5 months ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆65Updated 6 years ago
- ☆24Updated 8 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- easy access to benchmark datasets☆49Updated 6 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆104Updated last year
- Human transcription factor target genes from 6 databases in convenient R format.☆85Updated 5 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆32Updated 2 years ago
- Normalization for single cell RNA-seq data☆47Updated last year
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆40Updated 4 months ago
- ☆14Updated 5 months ago
- R package for working with CyToF data☆26Updated 4 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 5 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆43Updated 6 months ago
- flowWorkspace☆44Updated 6 months ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆72Updated 3 years ago
- ☆53Updated 6 months ago
- My notes/usage examples for various Bioconductor packages☆15Updated 7 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆60Updated 5 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆104Updated last year
- consistent quantification of external RNA-seq data sets☆58Updated 9 months ago
- Topics In Data Science and Bioinformatics☆78Updated 7 months ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 3 years ago
- ☆60Updated 4 years ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆73Updated 7 years ago
- ☆35Updated 8 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆41Updated 4 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆66Updated 5 months ago