SPADE: Spanning Tree Progression of Density Normalized Events
☆49Aug 23, 2016Updated 9 years ago
Alternatives and similar repositories for spade
Users that are interested in spade are comparing it to the libraries listed below
Sorting:
- Citrus Development Code☆31Apr 14, 2024Updated last year
- R package for working with CyToF data☆27May 11, 2020Updated 5 years ago
- scaffold☆18Aug 13, 2018Updated 7 years ago
- bead-based normalization of mass cytometry data☆13May 26, 2018Updated 7 years ago
- ☆26Apr 18, 2016Updated 9 years ago
- R package for differential discovery analyses in high-dimensional cytometry data☆24Feb 8, 2025Updated last year
- ☆19Mar 15, 2017Updated 9 years ago
- ☆16Apr 17, 2024Updated last year
- ☆12Jul 30, 2022Updated 3 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆46Feb 15, 2017Updated 9 years ago
- ☆56Apr 6, 2020Updated 5 years ago
- To reveal the cellular heterogeneity within flow cytometry data, clustering and pseudotime analysis can be performed. Here, we demonstrat…☆14Jul 5, 2022Updated 3 years ago
- Memory efficient clustering in R for large datasets☆22Aug 22, 2022Updated 3 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆66Oct 24, 2020Updated 5 years ago
- Cytometry by time-of-flight(CyTOF) data is very useful in studying the presence/absence of antigens/surface markers at single cell level.…☆14Jun 1, 2020Updated 5 years ago
- Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs …☆14Jan 16, 2017Updated 9 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆36Jun 18, 2018Updated 7 years ago
- Codes used for all the data analysis steps in the paper "Single-cell transcriptomics identifies an effectorness gradient shaping the resp…☆16Apr 15, 2020Updated 5 years ago
- Cytometry dATa anALYsis Tools☆75Mar 9, 2026Updated last week
- R package for pre-processing of mass and flow cytometry data☆47Sep 6, 2022Updated 3 years ago
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆61Dec 17, 2020Updated 5 years ago
- Dynamic statistical comparisons in R☆17Jun 29, 2018Updated 7 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Apr 17, 2023Updated 2 years ago
- quantixed FIJI update site☆17Jan 9, 2026Updated 2 months ago
- scRNA seq analysis using Seurat V3☆13Jun 23, 2021Updated 4 years ago
- Biomedical Relation Extraction for Transcription Factor and Gene / Gene Products (part of a Master Thesis at Rostlab, TUM)☆12Dec 23, 2017Updated 8 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- Subpopulation detection in high-dimensional single-cell data☆142Oct 22, 2020Updated 5 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆110Dec 16, 2022Updated 3 years ago
- Creates Random Coding Sequences with specified GC content and Amino Acid usage☆10Jun 21, 2022Updated 3 years ago
- A command-line finder with fzf☆15Nov 7, 2015Updated 10 years ago
- Population balance analysis☆44Apr 25, 2019Updated 6 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆68Dec 13, 2023Updated 2 years ago
- A package that provides data analysis pipeline for flow cytometry.☆81Mar 12, 2026Updated last week
- S3proxy provides a simple REST-interface to files and keys stored on the AWS S3 service.☆13Apr 2, 2014Updated 11 years ago
- Out-of-Core Principal Component Analysis☆19Dec 25, 2017Updated 8 years ago
- SCOUP is a probabilistic model to analyze single-cell expression data during differentiation☆10Apr 20, 2017Updated 8 years ago
- Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…☆114Mar 9, 2026Updated last week
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Feb 8, 2020Updated 6 years ago