R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
☆46Feb 15, 2017Updated 9 years ago
Alternatives and similar repositories for cytometry-clustering-comparison
Users that are interested in cytometry-clustering-comparison are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Mar 15, 2017Updated 9 years ago
- scaffold☆18Aug 13, 2018Updated 7 years ago
- R package for analysis of single-cell data using graphs☆10Jun 8, 2023Updated 2 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆68Dec 13, 2023Updated 2 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆66Oct 24, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆15Jan 16, 2024Updated 2 years ago
- Visualize Cytometry data with ggplot2☆65Mar 8, 2026Updated 3 weeks ago
- R package for pre-processing of mass and flow cytometry data☆47Sep 6, 2022Updated 3 years ago
- ☆26Apr 18, 2016Updated 9 years ago
- Worked example showing how to cluster and visualize flow/mass cytometry data using FlowSOM and Rtsne☆17Jan 30, 2017Updated 9 years ago
- Citrus Development Code☆31Apr 14, 2024Updated last year
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- ☆16Apr 17, 2024Updated last year
- SPADE: Spanning Tree Progression of Density Normalized Events☆49Aug 23, 2016Updated 9 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A GatingML Interface for Cross Platform Cytometry Data Sharing☆34Feb 10, 2026Updated last month
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago
- Cytometry dATa anALYsis Tools☆75Mar 9, 2026Updated 3 weeks ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆12Aug 13, 2020Updated 5 years ago
- A data-centric flow/mass cytometry automated analysis framework☆42Jan 22, 2025Updated last year
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆61Dec 17, 2020Updated 5 years ago
- ☆38Mar 24, 2023Updated 3 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Subpopulation detection in high-dimensional single-cell data☆142Oct 22, 2020Updated 5 years ago
- c++ library for representing and interacting the gated cytometry data structure☆14Jan 29, 2025Updated last year
- ☆24Jul 29, 2025Updated 8 months ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- A repository for my solutions to problems from - http://www.rosalind.info☆23May 1, 2021Updated 4 years ago
- Marker Enrichment Modeling (MEM)☆12Nov 22, 2021Updated 4 years ago
- A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces☆207Updated this week
- ☆10Feb 25, 2024Updated 2 years ago
- Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell S…☆11Sep 5, 2020Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R package for working with CyToF data☆27May 11, 2020Updated 5 years ago
- An R Interface to the ImmuneSpace database portal☆24Nov 28, 2023Updated 2 years ago
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15Apr 16, 2025Updated 11 months ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Jul 26, 2017Updated 8 years ago
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆56Nov 5, 2025Updated 4 months ago
- Repository☆10Oct 23, 2024Updated last year
- Bioinformatics pipelines for Resolwe☆19Updated this week