Alternatives and similar repositories for citrus

Users that are interested in citrus are comparing it to the libraries listed below

• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated last year
• lmweber / cytometry-clustering-comparison
  R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
  ☆45Updated 8 years ago
• compbiomed / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆48Updated 6 years ago
• davismcc / archive-scater
  An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
  ☆64Updated 8 years ago
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 7 years ago
• waldronlab / data-science-seminar
  Topics In Data Science and Bioinformatics
  ☆79Updated last year
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆47Updated 4 months ago
• RTCGA / RTCGA
  Download, integration and visualizations of the variety & volume of TCGA data.
  ☆51Updated 3 years ago
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 6 years ago
• YosefLab / scone
  ☆55Updated 11 months ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated 2 months ago
• ctlab / LinSeed
  Linseed: LINear Subspace identification for gene Expresion Deconvolution
  ☆33Updated 4 months ago
• kdkorthauer / scDD
  R package to identify genes with differential distributions in single-cell RNA-seq
  ☆33Updated 3 years ago
• kkdey / CountClust
  A R package for Grade of Membership model and Visualization of counts data:
  ☆32Updated 5 years ago
• drisso / zinbwave
  Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave
  ☆45Updated last year
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆29Updated 2 months ago
• czbiohub-sf / tabula-muris-vignettes
  Examples analyses using the single-cell RNA-seq data from mouse cell atlases
  ☆22Updated 6 years ago
• yanwu2014 / swne
  Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
  ☆106Updated 2 years ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆47Updated 2 years ago
• willtownes / glmpca
  ☆96Updated last year
• rhondabacher / SCnorm
  Normalization for single cell RNA-seq data
  ☆50Updated 7 months ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated last month
• RGLab / openCyto
  A package that provides data analysis pipeline for flow cytometry.
  ☆79Updated 4 months ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated last year
• JinmiaoChenLab / cytofkit
  cytofkit: an integrated flow/mass cytometry data analysis pipeline
  ☆59Updated 5 years ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆107Updated 2 years ago
• KrishnaswamyLab / phateR
  PHATE dimensionality reduction method implemented in R
  ☆81Updated 4 years ago
• andreaskapou / BPRMeth
  Modelling DNA methylation profiles
  ☆24Updated 5 years ago
• Teichlab / GPfates
  ☆21Updated 8 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆61Updated last year