Alternatives and similar repositories for CytoExploreR:

Users that are interested in CytoExploreR are comparing it to the libraries listed below

• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆62Updated 2 months ago
• markrobinsonuzh / cytofWorkflow
  ☆16Updated 11 months ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆73Updated this week
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆54Updated 2 months ago
• stemangiola / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated 3 months ago
• Bioconductor / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆27Updated last month
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• RGLab / ggcyto
  Visualize Cytometry data with ggplot2
  ☆58Updated last year
• MangiolaLaboratory / sccomp
  Mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆99Updated this week
• stemangiola / tidyseurat
  Seurat meets tidyverse. The best of both worlds.
  ☆159Updated 7 months ago
• RGLab / cytoverse
  collections of tools for cytometry data analysis
  ☆13Updated 4 years ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆44Updated 4 months ago
• drisso / SingleCellExperiment
  Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…
  ☆71Updated 2 weeks ago
• JinmiaoChenLab / cytofkit
  cytofkit: an integrated flow/mass cytometry data analysis pipeline
  ☆57Updated 4 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆59Updated 4 months ago
• federicomarini / GeneTonic
  Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
  ☆77Updated this week
• Bioconductor / OrchestratingSingleCellAnalysis
  Content for the OSCA Book.
  ☆66Updated 2 years ago
• arnesmits / DEP
  DEP package
  ☆28Updated 2 years ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆90Updated last month
• SydneyBioX / scMerge
  Statistical approach for removing unwanted variation from multiple single-cell datasets
  ☆67Updated 11 months ago
• kordastilab / ImmunoCluster
  ☆27Updated 3 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆65Updated 9 months ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆90Updated 3 months ago
• kevinblighe / CorLevelPlot
  Visualise correlation results and test significancies of these
  ☆23Updated 5 years ago
• hansenlab / minfi
  Devel repository for minfi
  ☆60Updated 10 months ago
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆96Updated 2 weeks ago
• RGLab / openCyto
  A package that provides data analysis pipeline for flow cytometry.
  ☆78Updated last week
• JinmiaoChenLab / Rphenograph
  Rphenograph: R implementation of the PhenoGraph algorithm
  ☆47Updated 4 years ago
• HelenaLC / CATALYST
  Cytometry dATa anALYsis Tools
  ☆67Updated 3 months ago
• saeyslab / FlowSOM
  Using self-organizing maps for visualization and interpretation of cytometry data
  ☆26Updated this week