Wittelab / orchidLinks
A novel management, annotation, and machine learning framework for analyzing cancer mutations
☆31Updated last year
Alternatives and similar repositories for orchid
Users that are interested in orchid are comparing it to the libraries listed below
Sorting:
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆29Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- ☆21Updated 2 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 5 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 7 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆29Updated 4 years ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Updated 2 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 5 months ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆37Updated 8 years ago