A novel management, annotation, and machine learning framework for analyzing cancer mutations
☆31Jul 4, 2024Updated 2 years ago
Alternatives and similar repositories for orchid
Users that are interested in orchid are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MuSiCa - Mutational Signatures in Cancer☆22Dec 23, 2023Updated 2 years ago
- ☆10Oct 21, 2019Updated 7 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Jun 25, 2019Updated 7 years ago
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Oct 9, 2019Updated 7 years ago
- Signaling Pathway Visualizer☆10Jun 22, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An Expectation-Maximization algorithm to infer mutational signatures☆27Nov 16, 2016Updated 9 years ago
- See the main fork of this repository here >>>☆39Sep 18, 2026Updated last month
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- SigMa is a probabilistic model for the sequential dependencies of mutation signatures☆17Jul 27, 2019Updated 7 years ago
- Tool to estimate purity of tumor samples exploiting DNA Methylation data☆13Nov 30, 2022Updated 3 years ago
- Home of the Genomic Feature and Variation Ontology (GFVO)☆16Mar 13, 2021Updated 5 years ago
- ☆11Jul 13, 2018Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- paplot creates various dynamic and interactive reports for cancer genome analysis.☆26Feb 1, 2023Updated 3 years ago
- Scientific Compute Container Specification and Support Library☆12Jan 12, 2017Updated 9 years ago
- ☆10May 29, 2023Updated 3 years ago
- Battenberg algorithm and associated implementation script☆55Oct 21, 2020Updated 6 years ago
- A framework to infer mutational signatures in cancer over time☆57Jul 9, 2019Updated 7 years ago
- ☆11May 27, 2025Updated last year
- Examples on how to use the karyoploteR R/Bioconductor package☆12Feb 3, 2023Updated 3 years ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- Data and workflow examples☆16Apr 9, 2018Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆59Feb 17, 2022Updated 4 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆72Aug 22, 2021Updated 5 years ago
- LAAVA: Long-read AAV Analysis☆13Oct 27, 2026Updated last week
- Structural Variant Prediction Viewer☆36Jul 19, 2017Updated 9 years ago
- Personal Cancer Genome Reporter (PCGR)☆284Updated this week
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 6 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 8 years ago
- A transposition caller.☆12Oct 5, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 5 years ago
- ☆23Sep 4, 2018Updated 8 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 5 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆80Sep 12, 2024Updated 2 years ago
- ☆35Sep 28, 2020Updated 6 years ago
- Python package to annotate and visualize gene fusions.☆68Updated this week
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆23Sep 24, 2018Updated 8 years ago