An R wrapper for running the SigProfilerPlotting framework
☆10Jan 29, 2026Updated last month
Alternatives and similar repositories for SigProfilerPlottingR
Users that are interested in SigProfilerPlottingR are comparing it to the libraries listed below
Sorting:
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated last month
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆52Feb 8, 2026Updated last month
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆119Feb 8, 2026Updated last month
- An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The…☆15Jan 29, 2026Updated last month
- SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be use…☆21Feb 10, 2026Updated last month
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆14Jul 24, 2025Updated 7 months ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated last month
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 4 years ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆180Mar 7, 2026Updated last week
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆76Feb 19, 2026Updated last month
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Feb 26, 2026Updated 3 weeks ago
- MuSiCa - Mutational Signatures in Cancer☆23Dec 23, 2023Updated 2 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Sep 19, 2017Updated 8 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Mar 21, 2021Updated 4 years ago
- An R package to visualize high-throughput sequencing data.☆12Nov 18, 2019Updated 6 years ago
- Interpretable bimodal network for transcription factors binding site prediction☆10Jun 29, 2023Updated 2 years ago
- ☆12Jul 31, 2025Updated 7 months ago
- Preparation of Object Dating Ranges for Density Plots☆10Jan 28, 2024Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Jun 3, 2025Updated 9 months ago
- Predicting transcription factor binding in single cells through deep learning☆13Oct 14, 2022Updated 3 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- Burden testing against public controls☆49Feb 27, 2024Updated 2 years ago
- Analysis of single cell RNA-Seq data from Veres et al.☆12Dec 10, 2019Updated 6 years ago
- An R package for visualizing comparison between two distributions.☆12Oct 30, 2018Updated 7 years ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆16Mar 11, 2024Updated 2 years ago
- Integral analysis of diversity based on Hill numbers☆11Feb 8, 2021Updated 5 years ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated last year
- ☆15May 11, 2018Updated 7 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Jul 14, 2023Updated 2 years ago
- Profile and Heatmap Visualization by Using ggplot2 and grid☆12Nov 21, 2023Updated 2 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Jan 7, 2025Updated last year
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆10Jan 6, 2023Updated 3 years ago
- ☆15Dec 29, 2025Updated 2 months ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- Vaeda method for computational doublet annotation☆19Feb 1, 2026Updated last month
- An R package to time somatic mutations☆67Dec 12, 2020Updated 5 years ago