HelloYiHan / DriverML
☆17Updated 3 years ago
Alternatives and similar repositories for DriverML:
Users that are interested in DriverML are comparing it to the libraries listed below
- ☆17Updated 10 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆16Updated 8 months ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 7 months ago
- Published at Bioinformatics☆12Updated 8 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 4 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆14Updated 2 years ago
- ☆12Updated 11 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 3 weeks ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated last year
- Explore the cancer relevance of your gene list☆51Updated last month
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆12Updated 5 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated 11 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated 7 months ago
- Junction centric alternative splicing translator☆19Updated 2 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- simplified cellranger for long-read data☆18Updated 6 months ago
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 5 months ago
- WES HLA Typing based on multiple alternative tools☆15Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago