HelloYiHan / DriverMLLinks
☆17Updated 4 years ago
Alternatives and similar repositories for DriverML
Users that are interested in DriverML are comparing it to the libraries listed below
Sorting:
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- Accompanying analysis code for the FRASER manuscript☆25Updated 5 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- ☆17Updated last year
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- Toolkit for benchmarking fusion transcript predictions☆19Updated last month
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Updated 3 years ago
- ☆22Updated 4 months ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Updated 6 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- iread☆25Updated 4 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- Comprehensive Human Expressed SequenceS☆19Updated 6 months ago
- a R package to identify neoantigens from NGS data☆19Updated 8 years ago
- DriverPower☆26Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- Workflow for Sequenza, cellularity and ploidy☆26Updated 5 months ago
- Snakemake workflow for neoantigen prediction☆14Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Python function for TMB snake plots☆16Updated 5 years ago
- WES HLA Typing based on multiple alternative tools☆18Updated 4 years ago
- Codes to regenerate figures for mutagen paper☆12Updated 4 years ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Updated 3 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Updated 4 years ago