HelloYiHan / DriverML
☆17Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for DriverML
- ☆17Updated 5 months ago
- Explore the cancer relevance of your gene list☆49Updated 2 months ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆17Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆15Updated last week
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last month
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 6 months ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- Versatile FASTA/FASTQ demultiplexer.☆32Updated 5 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆13Updated this week
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated last year
- ☆10Updated 4 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆12Updated 4 years ago
- Toolkit for benchmarking fusion transcript predictions☆17Updated 2 months ago
- RAGE-seq scripts☆18Updated 3 years ago
- ☆15Updated 3 months ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆17Updated last week
- iread☆23Updated 3 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 4 years ago
- Comprehensive Human Expressed SequenceS☆16Updated 3 months ago
- cDriver R package for finding candidate driver genes in cancers☆18Updated 6 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆27Updated 4 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated last year
- Differential ATAC-seq toolkit☆27Updated 10 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆38Updated 2 years ago