SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate signatures of single point mutations, double point mutations, and insertion/deletions. Further, the tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
☆21Feb 10, 2026Updated 2 weeks ago
Alternatives and similar repositories for SigProfilerSimulator
Users that are interested in SigProfilerSimulator are comparing it to the libraries listed below
Sorting:
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆117Feb 8, 2026Updated 3 weeks ago
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆52Feb 8, 2026Updated 3 weeks ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated last month
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆177Feb 1, 2026Updated last month
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆12Aug 21, 2025Updated 6 months ago
- ☆11Jul 13, 2018Updated 7 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Feb 16, 2026Updated last week
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 10 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- Python toolbox for phenotype analysis of arrayed microbial colonies☆17Feb 9, 2024Updated 2 years ago
- evaluating vcf parsing libraries☆19Mar 1, 2022Updated 4 years ago
- SigProfilerSingleSample allows attributing a known set of mutational signatures to an individual sample. The tool identifies the activity…☆23Jan 17, 2025Updated last year
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 4 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Sep 12, 2017Updated 8 years ago
- simuG: a general-purpose genome simulator☆99Jun 18, 2025Updated 8 months ago
- Visualise interstrain recombination from environmental samples.☆26Apr 18, 2019Updated 6 years ago
- An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infect…☆119Oct 27, 2023Updated 2 years ago
- Code for Russell et al. "A large-scale analysis of bioinformatics code on GitHub"☆34Apr 29, 2019Updated 6 years ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- Tools for genomic features in Julia.☆35Oct 1, 2024Updated last year
- High-definition reconstruction of clonal composition from next-generation sequencing data☆42Jun 10, 2016Updated 9 years ago
- Multi-sample cancer phylogeny reconstruction☆36Oct 19, 2017Updated 8 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Aug 14, 2023Updated 2 years ago
- A library of common biomedical types.☆40Apr 14, 2025Updated 10 months ago
- MGcount github repository☆14Jan 19, 2023Updated 3 years ago
- Master's project - Artificial Immune System for symbolic regression.☆14May 2, 2013Updated 12 years ago
- ☆10Apr 10, 2021Updated 4 years ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago
- Cell marker identification and evaluation pipeline in single cell transcriptomes.☆10Jan 9, 2025Updated last year
- Tcp Server and Client Implementation with multiple client handling.☆12Jul 13, 2025Updated 7 months ago
- Ruby UCSC API: An API for the UCSC Genome Database☆19Jul 21, 2022Updated 3 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- Fragment Graphical Variational AutoEncoding for Screening and Generating Molecules☆14Nov 21, 2022Updated 3 years ago
- GTK 4 front-end to ChatGPT completions written in Rust☆11Nov 2, 2025Updated 3 months ago
- HTSlib bindings for Ruby☆11Jan 13, 2026Updated last month