Alternatives and similar repositories for SigProfilerSimulator

Users that are interested in SigProfilerSimulator are comparing it to the libraries listed below

• visanuwan / cresil
  CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences
  ☆12Updated 5 months ago
• qiukunlong / seeksv
  A bioinformatics tool for SV detection and virus integration discovery
  ☆21Updated 8 years ago
• WGLab / PennCNV2
  A software package for detection of copy number alterations from tumor samples
  ☆12Updated 10 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• mskcc / lohhla
  Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs
  ☆32Updated 2 years ago
• bioinform / ecTMB
  ☆18Updated 4 years ago
• viq854 / lichee
  Multi-sample cancer phylogeny reconstruction
  ☆36Updated 8 years ago
• kensung-lab / SurVirus
  ☆18Updated 4 years ago
• yyoshiaki / VIRTUS
  A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
  ☆36Updated 3 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• sdchandra / CNAclinic
  ☆26Updated last year
• kunstner / freec2gistic
  Workflow: Convert CONTROL-freec output to GISTIC2
  ☆10Updated 4 years ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆29Updated last year
• cancerit / alleleCount
  Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…
  ☆44Updated 3 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆25Updated 7 years ago
• ndbrown6 / MSK-GRAIL-TECHVAL
  High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
  ☆22Updated 5 years ago
• mskcc / facets-suite
  Utility functions for FACETS
  ☆39Updated 3 months ago
• yuchaojiang / CODEX2
  Full-spectrum copy number variation detection by high-throughput DNA sequencing
  ☆40Updated 4 years ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆41Updated 3 years ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆28Updated 2 years ago
• Genomon-Project / GenomonSV
  structure detection program
  ☆18Updated last year
• danielfan / MuSE
  Somatic point mutation caller
  ☆17Updated 9 years ago
• fanyucai1 / TMB
  肿瘤突变负荷学习笔记（tumor mutation burden）
  ☆16Updated 6 years ago
• mhalushka / miRge3.0
  Comprehensive analysis of small RNA sequencing data
  ☆35Updated 8 months ago
• cancerit / ClusterSV
  SV clustering
  ☆31Updated 4 years ago
• mhalushka / miRge
  miRge - microRNA alignment software for small RNA-seq data, now at v2.0
  ☆28Updated 3 years ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated last year
• parklab / MuSiCal
  A comprehensive toolkit for mutational signature analysis
  ☆41Updated last year
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆25Updated 2 years ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆20Updated last week