a simulator of long read sequencing in pacbio and oxford nanopore
☆15Oct 13, 2016Updated 9 years ago
Alternatives and similar repositories for SiLiCO
Users that are interested in SiLiCO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 5 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.☆18Sep 7, 2022Updated 3 years ago
- Scripts for implementing read until and other examples.☆31Feb 25, 2020Updated 6 years ago
- MetaPORE – Chiu Laboratory, University of California, San Francisco☆12Nov 4, 2015Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tools used to analyze data from nanopore-based experiments.☆31Feb 1, 2015Updated 11 years ago
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Nov 17, 2025Updated 6 months ago
- The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.☆123Oct 20, 2020Updated 5 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- ASMNGS20 - 2020 Conference Details☆15Jun 10, 2022Updated 3 years ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Jul 24, 2015Updated 10 years ago
- Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.☆19Nov 30, 2017Updated 8 years ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- Error correction for Oxford Nanopore data☆47May 29, 2021Updated 5 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- Scripts to reproduce TrioBinning manuscript☆17Mar 31, 2020Updated 6 years ago
- MetaCarvel: A scaffolder for metagenomes☆14Apr 13, 2026Updated last month
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆12May 5, 2024Updated 2 years ago
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆28May 19, 2026Updated last week
- Assembly of Nanopore Sequencing☆17May 20, 2026Updated last week
- PacBio hybrid error correction through iterative short read consensus☆60May 17, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- ☆13Aug 15, 2025Updated 9 months ago
- ☆15Sep 26, 2019Updated 6 years ago
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆52Aug 9, 2021Updated 4 years ago
- FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.☆13Nov 5, 2025Updated 6 months ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Examples and code for optical pooled screens☆10Dec 8, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆18Jun 4, 2019Updated 6 years ago
- ☆14Jan 16, 2019Updated 7 years ago
- A python package from Pacific Biosciences to analyze centromeric sequences☆21Oct 7, 2015Updated 10 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated 2 years ago
- ☆33Sep 20, 2017Updated 8 years ago
- ☆18Sep 16, 2019Updated 6 years ago