A modular pipeline for constructing Pathway/Genome Databases from environmental sequence information
☆13Apr 4, 2025Updated last year
Alternatives and similar repositories for MetaPathways-legacy
Users that are interested in MetaPathways-legacy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds☆33Nov 26, 2015Updated 10 years ago
- Reproducible hybrid metagenomics with MAG recovery and strain-level resolution☆11Aug 20, 2026Updated 2 months ago
- ☆12Sep 26, 2016Updated 10 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆13Sep 19, 2017Updated 9 years ago
- ☆11Aug 29, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.☆18Mar 9, 2015Updated 11 years ago
- Build phylogenomic datasets in seconds☆15Updated this week
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆35Aug 26, 2024Updated 2 years ago
- Metagenomics Analysis Tools☆24May 7, 2018Updated 8 years ago
- Compression-focused fork of sylph, a fast species-level metagenomic profiler☆13Oct 15, 2026Updated 3 weeks ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- Compressed, associative, and exact hash table for k-mers☆11Oct 15, 2026Updated 3 weeks ago
- VIGOR4☆24Aug 15, 2025Updated last year
- 🛠️🧬 A Software Framework to Manipulate Assembly Graphs☆23Nov 4, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago
- Pathogenfinder2☆20Apr 20, 2026Updated 6 months ago
- Clustering cONtigs with COverage and ComposiTion☆140Mar 6, 2020Updated 6 years ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Mar 7, 2024Updated 2 years ago
- Skiver: Reference-free quality control of (meta)genomic sequencing datasets using (k, v)-mer sketches☆13Aug 19, 2026Updated 2 months ago
- One pure-Rust binary that finds genes in phages, viruses, giant viruses, crassphages, bacteria, archaea, eukaryotes — and raw sequencing …☆36Oct 14, 2026Updated 3 weeks ago
- Metagenomic binning suite☆29Sep 30, 2022Updated 4 years ago
- Python bindings for the TaxonKit library☆43Nov 2, 2026Updated last week
- Implementation of "Denoise Pretraining on Non-equilibrium Molecular Conformations for Accurate and Transferable Neural Potentials" in PyT…☆14Jul 26, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Official Repository for ZipStrain python package☆15Updated this week
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆53May 5, 2026Updated 6 months ago
- Metax: Accurate Cross-Domain Taxon Profiling via a Probabilistic Model of Genome Coverage☆40Updated this week
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆22Mar 17, 2021Updated 5 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 6 years ago
- MAG Circularization Method☆33Nov 4, 2025Updated last year
- Efficient protein domain annotation search with reduced amino acid k-mers☆12Nov 4, 2026Updated last week
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- MetaCarvel: A scaffolder for metagenomes☆14Apr 13, 2026Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 8 months ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54Nov 4, 2026Updated last week
- Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to l…☆15Oct 6, 2023Updated 3 years ago
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆33Sep 18, 2026Updated last month
- Bidirectional interface between SRI's Pathway Tools software and R☆10Apr 13, 2013Updated 13 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆25Sep 27, 2026Updated last month
- Miscellaneous scripts that serve a stand-alone purpose that might be useful for others.☆26Apr 28, 2021Updated 5 years ago
Are these results useful?