heiniglab / hawe2021_meQTL_analysesView external linksLinks
Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics
☆14Jan 14, 2022Updated 4 years ago
Alternatives and similar repositories for hawe2021_meQTL_analyses
Users that are interested in hawe2021_meQTL_analyses are comparing it to the libraries listed below
Sorting:
- ☆23Sep 23, 2022Updated 3 years ago
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated last year
- ☆16Jul 29, 2023Updated 2 years ago
- A tool to visualize the haplotype pattern and various information in excel.☆24Mar 5, 2025Updated 11 months ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆24Mar 28, 2022Updated 3 years ago
- The cattle Genotype-Tissue Expression atlas v1☆28Mar 14, 2023Updated 2 years ago
- QTL Discovery using Annotations☆29Dec 12, 2022Updated 3 years ago
- A collection of commonly used resources for complex trait genetics.☆36Feb 10, 2026Updated last week
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆34Sep 28, 2023Updated 2 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Jul 11, 2025Updated 7 months ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Dec 14, 2025Updated 2 months ago
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 6 years ago
- Pipeline for phasing sequence data in polyploids. Designed for target enrichment data, but probably works with other data too.☆12Jun 20, 2024Updated last year
- A simple realtime chat apoplication made using React JS, Node JS, Express JS, Socket IO and MongoDB.☆18Jul 12, 2024Updated last year
- We report a section-wide NLRome for the tuber-bearing section Petota, including the most important non-cereal food crop potato. Evolution…☆18Oct 31, 2025Updated 3 months ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13Jan 26, 2026Updated 3 weeks ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- R语言代谢组学数据分析☆12Feb 29, 2016Updated 9 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- Common scripts☆15Updated this week
- ☆10Feb 12, 2019Updated 7 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 2 years ago
- A R package for Participatory Plant Breeding statisticial analyses☆10Apr 30, 2021Updated 4 years ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 4 years ago
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jan 27, 2026Updated 3 weeks ago
- ☆13May 13, 2024Updated last year
- RNA seq analysis using Bioconductor (analysis built on limma, edgeR)☆12Sep 23, 2022Updated 3 years ago
- ☆11May 10, 2025Updated 9 months ago
- ☆11Sep 1, 2022Updated 3 years ago
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- QTL analysis in diallel populations☆12Dec 2, 2025Updated 2 months ago
- VAE package for reproducible generative models of biological data☆13Nov 28, 2024Updated last year
- scRNA数据分析中文教程☆11Jul 29, 2019Updated 6 years ago
- Tissue-specific variant annotation☆10Nov 19, 2018Updated 7 years ago
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- An example project built using django 1.7 and scrapy 1.0.3☆10Oct 13, 2018Updated 7 years ago