Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics
☆14Jan 14, 2022Updated 4 years ago
Alternatives and similar repositories for hawe2021_meQTL_analyses
Users that are interested in hawe2021_meQTL_analyses are comparing it to the libraries listed below
Sorting:
- ☆23Sep 23, 2022Updated 3 years ago
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated last year
- ☆16Jul 29, 2023Updated 2 years ago
- A tool to visualize the haplotype pattern and various information in excel.☆24Mar 5, 2025Updated last year
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆24Mar 28, 2022Updated 3 years ago
- The cattle Genotype-Tissue Expression atlas v1☆28Mar 14, 2023Updated 2 years ago
- QTL Discovery using Annotations☆29Dec 12, 2022Updated 3 years ago
- A collection of commonly used resources for complex trait genetics.☆37Feb 10, 2026Updated 3 weeks ago
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆34Sep 28, 2023Updated 2 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated last week
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Dec 14, 2025Updated 2 months ago
- Common scripts☆15Feb 16, 2026Updated 3 weeks ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A R package for Participatory Plant Breeding statisticial analyses☆10Apr 30, 2021Updated 4 years ago
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 6 years ago
- ☆10Feb 12, 2019Updated 7 years ago
- R语言代谢组学数据分析☆12Feb 29, 2016Updated 10 years ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13Jan 26, 2026Updated last month
- A simple realtime chat apoplication made using React JS, Node JS, Express JS, Socket IO and MongoDB.☆18Jul 12, 2024Updated last year
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 2 years ago
- Pipeline for phasing sequence data in polyploids. Designed for target enrichment data, but probably works with other data too.☆12Jun 20, 2024Updated last year
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 4 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 5 years ago
- Find CpG islands in genome☆11Mar 27, 2020Updated 5 years ago
- Generating polygenic risk scores in UK Biobank (University of Bristol)☆16Aug 14, 2020Updated 5 years ago
- ☆11Sep 1, 2022Updated 3 years ago
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆12Jun 11, 2019Updated 6 years ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- RNA seq analysis using Bioconductor (analysis built on limma, edgeR)☆12Sep 23, 2022Updated 3 years ago
- Tissue-specific variant annotation☆10Nov 19, 2018Updated 7 years ago
- Graph Neural Networks with Multiple Prior Knowledge for Multi-Omics Data Analysis☆11May 1, 2023Updated 2 years ago
- Differential Mutation Analysis☆11May 24, 2020Updated 5 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- ☆13May 13, 2024Updated last year
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jan 27, 2026Updated last month
- Scripts to generate and analyze afdb clusters☆11Sep 15, 2023Updated 2 years ago