petervangalen / MAESTER-2021
Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).
☆12Updated 11 months ago
Alternatives and similar repositories for MAESTER-2021:
Users that are interested in MAESTER-2021 are comparing it to the libraries listed below
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 6 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 11 months ago
- Functions for single cell data analysis☆31Updated 3 years ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 4 months ago
- Functional Inference of Gene Regulation☆43Updated 9 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- ☆35Updated 7 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 6 months ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- ☆15Updated last year
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated 10 months ago
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆12Updated last year
- single-cell clustering based on alternative splicing landscapes☆20Updated last year
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆10Updated 8 months ago
- ☆32Updated 5 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- ☆33Updated last year
- ☆50Updated 7 months ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 3 years ago
- ☆22Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Removing empty droplets in multiome datasets☆16Updated 10 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 3 months ago
- Whole mouse brain snATAC seq analysis☆25Updated last week
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 2 months ago
- ☆11Updated 2 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago