Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).
☆14May 18, 2024Updated 2 years ago
Alternatives and similar repositories for MAESTER-2021
Users that are interested in MAESTER-2021 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆23Jul 13, 2023Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Jan 15, 2023Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆27Oct 17, 2024Updated last year
- MCP server for single cell analysis☆12May 15, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Using TCR and expression for sequence embedding☆64Jan 6, 2026Updated 8 months ago
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆24Jan 25, 2023Updated 3 years ago
- ☆17Oct 20, 2023Updated 2 years ago
- Identification and targeting of treatment resistant progenitor populations in T-cell Acute Lymphoblastic Leukemia☆15May 16, 2024Updated 2 years ago
- ☆16Sep 13, 2024Updated 2 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆23Aug 1, 2024Updated 2 years ago
- ☆33Mar 1, 2023Updated 3 years ago
- ☆16Jun 27, 2024Updated 2 years ago
- A Snakemake pipeline for Xenium data analysis.☆28Jul 22, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆22Nov 9, 2023Updated 2 years ago
- SNV calling from single cell sequencing☆119Nov 11, 2024Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.☆20Jul 8, 2026Updated 2 months ago
- ☆23Jul 15, 2025Updated last year
- ☆12Nov 24, 2022Updated 3 years ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆31Updated this week
- Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cyt…☆28Apr 29, 2026Updated 4 months ago
- processes GoT amplicon data and generates a table of metrics☆32Jun 24, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- ☆32Aug 25, 2026Updated last month
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆46Jul 8, 2026Updated 2 months ago
- ☆13Jun 6, 2024Updated 2 years ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆36Jan 5, 2026Updated 8 months ago
- ☆14Mar 28, 2025Updated last year
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆15Apr 29, 2025Updated last year
- An UMI-tagged sequencing swiss-knife. Built for amplicon sequencing of immune repertoires, ctDNA and rare mutations, single-cell sequenci…☆43Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆45Jun 12, 2026Updated 3 months ago
- Transcript assembly and quantification for RNA-Seq☆12Jun 3, 2019Updated 7 years ago
- ☆50Apr 8, 2025Updated last year
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆75Apr 25, 2023Updated 3 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆87Updated this week
- ☆11Dec 4, 2023Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆86Sep 13, 2021Updated 5 years ago