petervangalen / MAESTER-2021Links
Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).
☆12Updated last year
Alternatives and similar repositories for MAESTER-2021
Users that are interested in MAESTER-2021 are comparing it to the libraries listed below
Sorting:
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆14Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Functional Inference of Gene Regulation☆49Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆34Updated this week
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- ☆10Updated 2 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆45Updated 5 months ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 4 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 10 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 5 years ago
- Integration of gut cell atlases☆32Updated 2 months ago
- cell type specific, trait-associated gene regulation☆29Updated 9 months ago
- ☆61Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆26Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Updated 4 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- ☆25Updated 2 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- ☆17Updated 2 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 4 months ago
- Multi-resolution Variational Inference☆22Updated last month
- Accurate and fast cell marker gene identification with COSG☆54Updated 3 weeks ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- Inferring CNV data from single cell ATAC seq☆25Updated 6 months ago
- ☆30Updated 8 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆35Updated last year