petervangalen / MAESTER-2021Links
Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).
☆12Updated last year
Alternatives and similar repositories for MAESTER-2021
Users that are interested in MAESTER-2021 are comparing it to the libraries listed below
Sorting:
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 11 months ago
- Functional Inference of Gene Regulation☆46Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last month
- ☆10Updated 2 years ago
- ☆59Updated 3 months ago
- ☆24Updated 2 years ago
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆12Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 9 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last week
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆13Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆17Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 7 months ago
- ☆17Updated 2 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Accurate and fast cell marker gene identification with COSG☆51Updated 6 months ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 3 years ago
- cell type specific, trait-associated gene regulation☆27Updated 5 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 4 months ago
- ☆31Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated 2 years ago