macarthur-lab / exac_2015
Companion repo for ExAC paper, 2015
☆33Updated 7 years ago
Related projects: ⓘ
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Updated 6 years ago
- R package containing functions for assessing the replication/preservation of network topology for weighted gene coexpression network modu…☆11Updated last year
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 5 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆34Updated last year
- An R client for broads firehose pipeline, providing TCGA data sets☆60Updated 5 years ago
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆22Updated 4 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 9 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- Multi-sample somatic variant caller☆48Updated 2 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 2 years ago
- ☆34Updated 8 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 7 years ago
- Tools for visualizing genomics data☆67Updated 2 years ago
- Get SNP proxies from the 1000 Genomes Project.☆28Updated 5 years ago
- Quick access to gene synonyms☆24Updated 2 weeks ago
- GTEx analysis scripts☆20Updated 7 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated 4 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆25Updated 3 years ago
- Analysis for svaseq paper☆19Updated 10 years ago
- Transcript quantification import with automatic metadata detection☆66Updated 3 months ago
- Student website repo for 2015/2016 Canadian Bioinformatics Workshops☆34Updated last year
- combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆43Updated 2 years ago
- Summer school course materials collection☆25Updated 6 years ago
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Updated 10 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆40Updated 3 months ago
- gnomAD browser pre-ASHG 2018☆33Updated 3 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆54Updated 11 years ago