asabjorklund / ILC_scRNAseq
Analysis of single cell RNA-seq data from innate lympoid cells
☆14Updated 7 years ago
Related projects: ⓘ
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Single-cell Orientation Tracing☆21Updated 2 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 2 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆26Updated 8 months ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆22Updated 4 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆18Updated 2 months ago
- ☆16Updated 5 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 2 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆16Updated last year
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆22Updated 4 years ago
- Clone identification from single-cell data☆57Updated last year
- ☆29Updated 5 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆14Updated 2 years ago
- ☆11Updated 2 months ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆17Updated 4 years ago
- ☆18Updated 6 months ago
- Cluster Identity Predictor (R package implementation)☆18Updated 2 years ago
- Figure depicting the breadth of multimodal scRNA-seq technologies☆14Updated 5 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 5 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 3 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago
- GLASS consortium☆13Updated 2 years ago
- ☆36Updated 3 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆19Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆40Updated 7 months ago
- Bead-based single-cell atac processing☆31Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆31Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 4 years ago