Alternatives and similar repositories for aou_gwas

Users that are interested in aou_gwas are comparing it to the libraries listed below

• FINNGEN / saige-pipelines
  ☆16Updated last year
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆34Updated 4 months ago
• adimitromanolakis / sim1000G
  Simulation of rare and common variants based on 1000 genomes data
  ☆19Updated 3 years ago
• broadinstitute / gnomad-mitochondria
  ☆15Updated last year
• Jianhua-Wang / GWAS-pipeline
  From QC to summary statistics
  ☆16Updated 5 years ago
• Genentech / midasHLA
  R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…
  ☆12Updated last year
• tengmx / rnaseqcomp
  Benchmarks for RNA-seq quantification pipelines
  ☆8Updated 5 years ago
• MCorentin / vargen
  VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…
  ☆17Updated last year
• WansonChoi / HATK
  A collection of modules to process and analyze IMGT-HLA sequences.
  ☆29Updated 2 years ago
• kircherlab / CADD-SV
  CADD-SV – a framework to score the effect of structural variants
  ☆14Updated 3 months ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆34Updated last year
• zhouhufeng / FAVORannotator
  ☆20Updated 2 years ago
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 10 months ago
• tf2 / CNest
  Copy Number Methods for Detection and Genome Wide Association Tests
  ☆22Updated 7 months ago
• karltayeb / cafeh
  ☆13Updated 2 years ago
• aprilweilab / picovcf
  Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.
  ☆17Updated this week
• astrazeneca-cgr-publications / JARVIS
  JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
  ☆23Updated 5 months ago
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆26Updated 2 years ago
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated 2 years ago
• diptavo / MultiSKAT
  MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…
  ☆11Updated 6 years ago
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆43Updated this week
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆30Updated 2 years ago
• mcveanlab / TreeWAS
  ☆16Updated 7 years ago
• dongxuemin666 / RNA-combine
  RNA-seq data comprehensive data analysis toolbox
  ☆19Updated 2 years ago
• HurlesGroupSanger / DeNovoWEST
  ☆21Updated 2 months ago
• trichelab / MTseeker
  mitochondrial variant analysis tools
  ☆14Updated 4 years ago
• casanova-lab / NHC
  NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity
  ☆10Updated last year
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆37Updated last year
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 3 months ago