Alternatives and similar repositories for aou_gwas

Users that are interested in aou_gwas are comparing it to the libraries listed below

• dongxuemin666 / RNA-combine
  RNA-seq data comprehensive data analysis toolbox
  ☆19Updated 2 years ago
• elyadlezmi / RNA2CM
  Pipeline for the identification of cancer-related mutations from RNA-seq data
  ☆14Updated 4 years ago
• jamesware / alleleFrequencyApp
  Allele frequency filter app
  ☆14Updated 3 years ago
• AlexsLemonade / scpca-nf
  scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
  ☆15Updated this week
• mtmorgan / AlphaMissenseR
  Accessing AlphaMissense Data Resources in R
  ☆10Updated 2 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• databio / GenomicDistributions
  Calculate and plot distributions of genomic ranges
  ☆26Updated 5 months ago
• gagneurlab / RNAseq-ASHG
  RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
  ☆17Updated 3 years ago
• G3viz / g3viz
  Lollipop-diagram to interactively visualize genetic mutations
  ☆33Updated last year
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆52Updated 3 weeks ago
• adimitromanolakis / sim1000G
  Simulation of rare and common variants based on 1000 genomes data
  ☆19Updated 4 years ago
• MCorentin / vargen
  VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…
  ☆17Updated last year
• sigven / pharmOncoX
  Targeted and non-targeted anticancer drugs and drug regimens
  ☆29Updated 2 weeks ago
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆38Updated last year
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• broadinstitute / gnomad_lof
  ☆11Updated 2 years ago
• friend1ws / pmsignature
  R package for extracting mutation signatures from a list of somatic mutations
  ☆37Updated 6 years ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated last year
• trichelab / MTseeker
  mitochondrial variant analysis tools
  ☆15Updated 4 years ago
• beroukhim-lab / ascets
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…
  ☆18Updated last year
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated last year
• ImperialCardioGenetics / frequencyFilter
  Allele frequency filtering for Mendelian variant discovery
  ☆18Updated 9 years ago
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆34Updated 7 months ago
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆17Updated 3 years ago
• brentp / 450k-analysis-guide
  A Practical (And Opinionated) Guide To Analyzing 450K Data
  ☆35Updated 11 years ago
• liulab-dfci / CHIPS
  A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
  ☆20Updated 4 years ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 8 months ago
• AlexsLemonade / OpenScPCA-analysis
  An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal
  ☆15Updated 3 weeks ago
• oganm / geneSynonym
  Quick access to gene synonyms
  ☆29Updated last week