bwlewis / 1000_genomes_examplesLinks
Examples using R and 1000 genomes data
☆28Updated 4 years ago
Alternatives and similar repositories for 1000_genomes_examples
Users that are interested in 1000_genomes_examples are comparing it to the libraries listed below
Sorting:
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 9 months ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 weeks ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 6 years ago
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 7 months ago
- Interactive benchmarking of ranking and assignment methods☆16Updated 3 months ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 5 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 7 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- ☆13Updated 3 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Gene network analysis☆19Updated 2 years ago
- Glimma R package☆50Updated 10 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- genetic correlation between phenotypes in the UK biobank☆12Updated last year
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆43Updated 7 months ago
- Code for performing PCA followed by CCA☆18Updated 6 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated 2 years ago