Vials is a Caleydo Web application for visualizing alternative splicing based on mRNAseq data.
☆13Jan 8, 2018Updated 8 years ago
Alternatives and similar repositories for vials
Users that are interested in vials are comparing it to the libraries listed below
Sorting:
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Oct 9, 2017Updated 8 years ago
- ☆12Dec 1, 2021Updated 4 years ago
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Sep 4, 2019Updated 6 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- FlashFry: The rapid CRISPR target site characterization tool☆80Jun 12, 2024Updated last year
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 7 months ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Jun 13, 2022Updated 3 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Jun 23, 2016Updated 9 years ago
- Metagenomics-focused BAM file manipulation☆15Jul 8, 2019Updated 6 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 9 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated last year
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Jan 16, 2025Updated last year
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Sep 20, 2017Updated 8 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jul 12, 2020Updated 5 years ago
- ☆28Oct 5, 2018Updated 7 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆16May 21, 2014Updated 11 years ago
- ☆11Apr 26, 2021Updated 4 years ago
- Tutorial for the analysis of scRNA-seq data in R☆18Aug 28, 2018Updated 7 years ago
- Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript☆17Nov 13, 2017Updated 8 years ago
- DeeNA Zip (SAM/BAM compression tool)☆13May 25, 2019Updated 6 years ago
- ☆28Mar 15, 2017Updated 9 years ago
- Stupid Simple Elastic Compute Cloud☆16Dec 7, 2023Updated 2 years ago
- Shape analysis of high-throughput data☆19Feb 24, 2016Updated 10 years ago
- Visual exploration of large genome interaction matrices with interactive small multiples.☆13Dec 1, 2021Updated 4 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 9 years ago
- ☆14Apr 26, 2023Updated 2 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Exon-exon splice junctions across SRA☆43Jul 30, 2021Updated 4 years ago
- Build and Deliver Software with Containers☆32Oct 2, 2020Updated 5 years ago
- ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads☆15Apr 30, 2019Updated 6 years ago
- probability of mendelian error in trios.☆11Jan 27, 2016Updated 10 years ago
- Sample Level Analysis of Pathway Alteration Enrichments☆10Jan 21, 2019Updated 7 years ago
- Parallel implementation of the LAST aligner☆18Nov 27, 2016Updated 9 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Nov 29, 2022Updated 3 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Dec 16, 2020Updated 5 years ago
- FASTQ compression via boosting Sequence Compression Algorithms using Locally Consistent Encoding☆14Sep 11, 2020Updated 5 years ago