Alternatives and similar repositories for Skymap

Users that are interested in Skymap are comparing it to the libraries listed below

• niemasd / ViReport-COVID-19

  View on GitHub
  ViReport analysis of COVID-19 using GISAID data
  ☆20Sep 20, 2020Updated 5 years ago
• mragsac / BISB-Bootcamp-2021

  View on GitHub
  FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program
  ☆19Sep 16, 2021Updated 4 years ago
• alexvpickering / handlr

  View on GitHub
  R as a backend for web apps.
  ☆10Mar 7, 2018Updated 7 years ago
• ksahlin / BESST_RNA

  View on GitHub
  Scaffolding of genomic assemblies with RNA seq data
  ☆15Oct 8, 2015Updated 10 years ago
• opentargets / genetics-v2d-data

  View on GitHub
  Variant to disease dataset workflows for Open Targets Genetics
  ☆13Aug 23, 2022Updated 3 years ago
• medvedevgroup / bloomtree-allsome

  View on GitHub
  Sequence Bloom Trees with All/Some split
  ☆11Oct 30, 2018Updated 7 years ago
• churchill-lab / emase

  View on GitHub
  Expectation-Maximization algorithm for Allele-Specific Expression
  ☆21May 9, 2023Updated 2 years ago
• vsbuffalo / granges

  View on GitHub
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101May 29, 2024Updated last year
• AlexsLemonade / scpca-nf

  View on GitHub
  scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
  ☆13Updated this week
• galaxyproject / ansible-galaxy-extras

  View on GitHub
  (Deprecated) Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproje…
  ☆11Nov 9, 2024Updated last year
• St4NNi / jam-rs

  View on GitHub
  Just another minhash implementation.
  ☆12Updated this week
• brianyiktaktsui / DEEP_NLP

  View on GitHub
  ☆12Aug 14, 2020Updated 5 years ago
• sherrillmix / vipor

  View on GitHub
  Plot one-dimensional data using quasirandom noise and density estimates
  ☆25Dec 20, 2023Updated 2 years ago
• pachterlab / kma

  View on GitHub
  Keep Me Around: Intron Retention Detection
  ☆30Jan 30, 2019Updated 7 years ago
• agneantanaviciute / colonicepithelium

  View on GitHub
  ☆12Feb 27, 2019Updated 6 years ago
• sarahhainer / uliCUT-RUN

  View on GitHub
  Example scripts for analyzing CUT&RUN datasets
  ☆13Oct 3, 2018Updated 7 years ago
• mlangill / MicrobeDB

  View on GitHub
  Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI
  ☆24Sep 3, 2014Updated 11 years ago
• DataBiosphere / data-explorer

  View on GitHub
  ☆11Dec 8, 2022Updated 3 years ago
• gui11aume / mmp

  View on GitHub
  MEM mapper prototype
  ☆13Nov 28, 2020Updated 5 years ago
• skandlab / MutSpot

  View on GitHub
  ☆18May 8, 2023Updated 2 years ago
• 10XGenomics / rust-pseudoaligner

  View on GitHub
  Single-Cell RNA-seq pseudo-aligner
  ☆52May 6, 2024Updated last year
• hillerlab / IterativeErrorCorrection

  View on GitHub
  Iterative error correction of long reads
  ☆13Dec 9, 2022Updated 3 years ago
• flo-compbio / genometools

  View on GitHub
  GenomeTools: Scripts and Classes for Working with Genomic Data
  ☆12Jun 7, 2018Updated 7 years ago
• edsgard / geneiase

  View on GitHub
  Gene-based test of allele-specific expression without requiring haplotype information
  ☆16Mar 20, 2018Updated 7 years ago
• COMBINE-lab / piscem-infer

  View on GitHub
  ☆14Aug 5, 2025Updated 6 months ago
• 38 / pyd4

  View on GitHub
  The python binding for D4 format
  ☆16Oct 22, 2021Updated 4 years ago
• bo1929 / krepp

  View on GitHub
  A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.
  ☆18Feb 6, 2026Updated last week
• shenwei356 / ncbi_acc2gtdb_acc

  View on GitHub
  Mapping NCBI Genbank accession to GTDB accession
  ☆14Feb 13, 2021Updated 5 years ago
• mbhall88 / streamformatics

  View on GitHub
  Real-time species-typing visualisation for nanopore data.
  ☆13Apr 11, 2023Updated 2 years ago
• atgu / aou_gwas

  View on GitHub
  ☆14Oct 29, 2025Updated 3 months ago
• nanoporetech / Pore-C-Snakemake

  View on GitHub
  ☆35Feb 22, 2023Updated 2 years ago
• COMBINE-lab / terminus

  View on GitHub
  ☆57Aug 11, 2022Updated 3 years ago
• genesofeve / projectR

  View on GitHub
  ☆63Mar 18, 2025Updated 10 months ago
• jsevo / taxumap

  View on GitHub
  ☆16May 22, 2023Updated 2 years ago
• nellore / runs

  View on GitHub
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15May 22, 2019Updated 6 years ago
• chfi / rs-gfa-utils

  View on GitHub
  ☆15Jun 29, 2021Updated 4 years ago
• jolespin / leviathan

  View on GitHub
  Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…
  ☆18Feb 4, 2026Updated last week
• BgeeDB / BgeeDB_R

  View on GitHub
  Source code of the R packge BgeeDB to use data from the Bgee database
  ☆16Oct 8, 2025Updated 4 months ago
• epruesse / ymp

  View on GitHub
  Flexible omics pipeline
  ☆17Oct 16, 2025Updated 3 months ago