brianyiktaktsui / SkymapLinks
High-throughput gene to knowledge mapping through massive integration of public sequencing data.
☆31Updated 6 years ago
Alternatives and similar repositories for Skymap
Users that are interested in Skymap are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Transcript quantification import with automatic metadata detection☆67Updated 2 weeks ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 5 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 7 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- interactive plots for differential expression analysis☆34Updated 4 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 7 months ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated 3 weeks ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆40Updated last year
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆34Updated 2 weeks ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- Calculate and plot distributions of genomic ranges☆26Updated 6 months ago
- Fast fusion detection using kallisto☆79Updated 4 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated last week
- A small R package to make sequencing read coverage plots in R.☆39Updated 2 weeks ago