brianyiktaktsui / SkymapLinks
High-throughput gene to knowledge mapping through massive integration of public sequencing data.
☆31Updated 6 years ago
Alternatives and similar repositories for Skymap
Users that are interested in Skymap are comparing it to the libraries listed below
Sorting:
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Calculate and plot distributions of genomic ranges☆26Updated 5 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 6 months ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 5 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- Fast fusion detection using kallisto☆79Updated 4 months ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Genomic data interpretation and visualization Workshop☆21Updated 3 weeks ago
- A small R package to make sequencing read coverage plots in R.☆39Updated this week
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Response to blog post about Salmon☆37Updated 8 years ago