Bioconductor / GoogleGenomicsLinks
[DEPRECATED] An R package for Google Genomics API queries.
☆45Updated 2 years ago
Alternatives and similar repositories for GoogleGenomics
Users that are interested in GoogleGenomics are comparing it to the libraries listed below
Sorting:
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 8 months ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Updated 7 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R☆35Updated 3 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- [DEPRECATED] Docker containers for Bioconductor☆49Updated 2 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆44Updated 8 months ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated last month
- Nozzle is a report generation toolkit for data analysis pipelines implemented in R.☆67Updated 9 years ago
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆87Updated 3 years ago
- Glimma R package☆50Updated 11 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Normalization for single cell RNA-seq data☆48Updated 2 months ago
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Updated 11 years ago
- Reactome Pathway Analysis☆43Updated 4 months ago
- Transcript quantification import with automatic metadata detection☆68Updated this week
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- ☆35Updated 9 years ago
- Bioconductor package for management of multi-assay data☆73Updated last week
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆25Updated 4 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 months ago