The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regions below an adjustable coverage threshold.
☆14Apr 22, 2015Updated 10 years ago
Alternatives and similar repositories for ExCID
Users that are interested in ExCID are comparing it to the libraries listed below
Sorting:
- probability of mendelian error in trios.☆11Jan 27, 2016Updated 10 years ago
- Contig Ploidy and Allele Dosage Estimation☆10Oct 30, 2015Updated 10 years ago
- Variant Annotation, Segregation and Exclusion for family or cohort based rare-disease sequencing studies.☆12Jun 2, 2022Updated 3 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Jul 6, 2022Updated 3 years ago
- ☆63Sep 21, 2016Updated 9 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- QDNAseq.hg38: QDNAseq bin annotation for the human genome build hg38☆17Dec 16, 2025Updated 2 months ago
- A python tool for parsing pedigree files☆16Aug 29, 2017Updated 8 years ago
- ☆19Updated this week
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18May 9, 2024Updated last year
- scripts to automatically update ANNOVAR db☆18Nov 17, 2021Updated 4 years ago
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated 6 months ago
- Website to analyze conflicting assertions in ClinVar☆19Jan 24, 2026Updated last month
- myVCF: a web-based platform for target and exome mutations data management☆21Apr 13, 2021Updated 4 years ago
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆48May 27, 2025Updated 9 months ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆131Feb 13, 2020Updated 6 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 10 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Aug 18, 2020Updated 5 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Sep 27, 2021Updated 4 years ago
- LOVD3 development repository☆25Oct 13, 2025Updated 4 months ago
- ☆27Feb 20, 2026Updated last week
- TAPES : a Tool for Assessment and Prioritisation in Exome Studies☆25Sep 30, 2025Updated 5 months ago
- A needle plot for mutation data☆27Aug 31, 2017Updated 8 years ago
- ☆28Mar 15, 2017Updated 8 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Feb 20, 2021Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Jan 20, 2018Updated 8 years ago
- Companion repo for ExAC paper, 2015☆33Oct 10, 2016Updated 9 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Feb 9, 2026Updated 2 weeks ago
- The DNAnexus incremental upload script packaged as an Ansible Role☆13Apr 7, 2025Updated 10 months ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Jan 15, 2021Updated 5 years ago
- Sample Level Analysis of Pathway Alteration Enrichments☆10Jan 21, 2019Updated 7 years ago
- ☆11Oct 11, 2024Updated last year
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Sep 3, 2019Updated 6 years ago
- VETA - A simple tool do evaluate variant predictors☆11Jun 17, 2024Updated last year
- The Industrialisation and Professionalisation of Data Science: 12 Questions☆13Aug 12, 2017Updated 8 years ago