cbuhay / ExCIDLinks
The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regions below an adjustable coverage threshold.
☆14Updated 10 years ago
Alternatives and similar repositories for ExCID
Users that are interested in ExCID are comparing it to the libraries listed below
Sorting:
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Structural Variant Index☆75Updated last year
- CNV screening and annotation tool☆25Updated 9 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Data and information about the Polaris study☆55Updated 6 years ago
- Linked-Read Alignment Tool☆26Updated 6 years ago
- reference implementation of GA4GH WGS Quality Control Standards☆11Updated last month
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Collection of notes and scripts related to NGS☆14Updated last week
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆37Updated 3 weeks ago
- for detecting internal tandem duplication from genome sequence data.☆11Updated 6 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Updated last year
- ☆46Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆50Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 4 months ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Updated 3 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated last month
- An awk-like VCF parser☆56Updated 2 years ago
- ☆44Updated last year
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago