cbuhay / ExCID
The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regions below an adjustable coverage threshold.
☆14Updated 9 years ago
Alternatives and similar repositories for ExCID:
Users that are interested in ExCID are comparing it to the libraries listed below
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆17Updated 7 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Linked-Read Alignment Tool☆27Updated 5 years ago
- ☆35Updated 3 years ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- ☆39Updated 5 months ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆32Updated 2 months ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- ☆39Updated 9 months ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆22Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 7 months ago
- for detecting internal tandem duplication from genome sequence data.☆11Updated 5 years ago
- CNV screening and annotation tool☆24Updated 8 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Assign gene names to regions in a BED file☆23Updated last year
- ☆45Updated 5 years ago
- Structural Variant Index☆71Updated 2 months ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago