Scripts for HiRES analysis
☆14Jul 26, 2024Updated last year
Alternatives and similar repositories for HiRES
Users that are interested in HiRES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DECIPHER for learning high-fidelity disentangled embeddings from spatial omics data☆24Jan 20, 2026Updated 2 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆20Sep 12, 2023Updated 2 years ago
- R functions for very fast eigenvector calculation☆11Jan 18, 2023Updated 3 years ago
- ☆71Nov 21, 2025Updated 4 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆74Mar 7, 2026Updated 2 weeks ago
- Algorithm to identify chromatin fountains☆22Apr 25, 2024Updated last year
- Notes on single-cell Hi-C technologies, tools, and data☆88Feb 28, 2026Updated 3 weeks ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆15Nov 21, 2023Updated 2 years ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆15Oct 6, 2025Updated 5 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆116Jan 8, 2026Updated 2 months ago
- ☆32Sep 28, 2019Updated 6 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 4 years ago
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Jul 6, 2023Updated 2 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Apr 8, 2024Updated last year
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Aug 28, 2025Updated 6 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆92Oct 29, 2025Updated 4 months ago
- Transcript assembly and quantification for RNA-Seq☆12Jun 3, 2019Updated 6 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Aug 29, 2022Updated 3 years ago
- Supervised cell type identification for scATAC-seq data☆14Aug 23, 2023Updated 2 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- Out-of-Core Principal Component Analysis☆19Dec 25, 2017Updated 8 years ago
- Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Lars…☆40Apr 22, 2024Updated last year
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆207May 19, 2018Updated 7 years ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated last year
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Mar 15, 2024Updated 2 years ago
- a computational tool for analyzing single cell Hi-C data☆25Apr 23, 2024Updated last year
- SPM in Julia☆13Sep 1, 2023Updated 2 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Feb 21, 2023Updated 3 years ago
- GENome Organisation Visual Analytics☆86Feb 3, 2026Updated last month
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 3 months ago
- Draft of mini-lectures about file organization and naming.☆14May 14, 2015Updated 10 years ago
- R package: Manifold learning in R☆13Apr 7, 2020Updated 5 years ago
- http://a-terada.github.com/lamp/☆14Jul 14, 2023Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 4 years ago
- Source codes and example scripts for chromatin tracing projects in Zhuang lab☆28Jan 27, 2022Updated 4 years ago