Scripts for HiRES analysis
☆14Jul 26, 2024Updated last year
Alternatives and similar repositories for HiRES
Users that are interested in HiRES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DECIPHER for learning high-fidelity disentangled embeddings from spatial omics data☆25Jan 20, 2026Updated 6 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆21Sep 12, 2023Updated 2 years ago
- R functions for very fast eigenvector calculation☆11Jan 18, 2023Updated 3 years ago
- ☆73Nov 21, 2025Updated 8 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆78Jun 24, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Algorithm to identify chromatin fountains☆22Apr 25, 2024Updated 2 years ago
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆16Nov 21, 2023Updated 2 years ago
- Notes on single-cell Hi-C technologies, tools, and data☆89Jun 29, 2026Updated 3 weeks ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆15Oct 6, 2025Updated 9 months ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Jul 6, 2023Updated 3 years ago
- ☆32Sep 28, 2019Updated 6 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 5 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Apr 8, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Aug 28, 2025Updated 10 months ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆12Mar 11, 2020Updated 6 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆95Oct 29, 2025Updated 8 months ago
- Chromatin States Map in mouse embryonic stem cell☆19Apr 11, 2018Updated 8 years ago
- Transcript assembly and quantification for RNA-Seq☆12Jun 3, 2019Updated 7 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆95Aug 29, 2022Updated 3 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- Genetic based optimization prior to standard backpropagation, the accompanying medium article can be found here☆15Jan 3, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆213May 19, 2018Updated 8 years ago
- Draft of mini-lectures about file organization and naming.☆14May 14, 2015Updated 11 years ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆12Mar 3, 2025Updated last year
- GENome Organisation Visual Analytics☆92Feb 3, 2026Updated 5 months ago
- a computational tool for analyzing single cell Hi-C data☆27Apr 23, 2024Updated 2 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆30Mar 15, 2024Updated 2 years ago
- Einstein Summation for Arrays in R☆12Jul 8, 2026Updated last week
- SPM in Julia☆13Sep 1, 2023Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆29Feb 21, 2023Updated 3 years ago
- Scalable framework for comparing metric measure spaces with up to 1M points.☆16Apr 6, 2021Updated 5 years ago
- Supervised cell type identification for scATAC-seq data☆15Aug 23, 2023Updated 2 years ago
- Clone of the Bioconductor repository for the TileDBArray package.☆11Apr 10, 2026Updated 3 months ago
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 4 years ago
- http://a-terada.github.com/lamp/☆14Jul 14, 2023Updated 3 years ago
- R package: Manifold learning in R☆14Apr 7, 2020Updated 6 years ago