ay-lab / fithic
Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.
☆85Updated 2 years ago
Alternatives and similar repositories for fithic:
Users that are interested in fithic are comparing it to the libraries listed below
- Allele-specific alignment sorting☆55Updated 2 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆107Updated 4 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆112Updated 3 months ago
- HiC uniform processing pipeline☆59Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- A modular Hi-C mapping pipeline☆94Updated 5 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆68Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆79Updated 6 months ago
- Lightweight converter between hic and cool contact matrices.☆71Updated 9 months ago
- Software for Quantifying Interspersed Repeat Expression☆55Updated 2 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆64Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- HMMRATAC peak caller for ATAC-seq data☆100Updated 5 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆110Updated 2 weeks ago
- ☆58Updated 3 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆63Updated 5 months ago
- Package for analysis and characterization of differential TADs☆24Updated 3 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆71Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 3 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆74Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆114Updated 9 months ago
- Genome-wide contact analysis using sklearn☆64Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆89Updated last month
- FAN-C: Framework for the ANalysis of C-like data☆112Updated last year
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆99Updated this week
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆62Updated 9 months ago