ay-lab / fithicLinks
Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.
☆86Updated 2 years ago
Alternatives and similar repositories for fithic
Users that are interested in fithic are comparing it to the libraries listed below
Sorting:
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆113Updated 2 weeks ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- FAN-C: Framework for the ANalysis of C-like data☆115Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 6 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆67Updated last year
- HiC uniform processing pipeline☆60Updated last year
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated 8 months ago
- Software for Quantifying Interspersed Repeat Expression☆60Updated 3 years ago
- Quantification of transposable element expression using RNA-seq☆71Updated last year
- Publication quality NGS track plotting☆114Updated 3 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆73Updated 2 years ago
- Lightweight converter between hic and cool contact matrices.☆73Updated last year
- A modular Hi-C mapping pipeline☆97Updated 7 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated last month
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- ☆58Updated 3 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆64Updated last year
- FEELnc : FlExible Extraction of LncRNA☆89Updated 10 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆74Updated 2 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆129Updated last week
- Genome-wide contact analysis using sklearn☆68Updated last year
- A self-contained repository of all code needed for SPRITE analysis☆21Updated 3 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆28Updated 5 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆114Updated last week
- release version☆54Updated 2 years ago
- A versatile aligning pipeline for bisulfite sequencing data☆65Updated 6 years ago