JRowleyLab / HiCrayonLinks
Web-Application for the cross-visualization of HiC and ChIP-seq data.
☆18Updated 10 months ago
Alternatives and similar repositories for HiCrayon
Users that are interested in HiCrayon are comparing it to the libraries listed below
Sorting:
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 4 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- 4C-seq processing pipeline☆24Updated 5 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- A Python implementation for BH-FDR and HiCCUPS☆51Updated 4 months ago
- A program for the analysis of single cell nanopore long read data☆19Updated 2 months ago
- Blazing fast toolkit to work with .hic and .cool files☆38Updated last week
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- ☆32Updated 9 months ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆15Updated 3 years ago
- ☆18Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- ☆22Updated 2 years ago
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- Transcription Factor Enrichment Analysis☆35Updated last week
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- ☆12Updated 3 years ago
- ☆39Updated 2 months ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- An Optimized Nested TAD caller for Hi-C data☆23Updated 4 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 7 months ago