JRowleyLab / HiCrayonLinks
Web-Application for the cross-visualization of HiC and ChIP-seq data.
☆18Updated last year
Alternatives and similar repositories for HiCrayon
Users that are interested in HiCrayon are comparing it to the libraries listed below
Sorting:
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆22Updated last year
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- Blazing fast toolkit to work with .hic and .cool files☆42Updated last week
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- ☆34Updated last month
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 11 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆16Updated 4 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆64Updated 7 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆16Updated 4 years ago
- ☆23Updated 10 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆40Updated last year
- chia pet analysis software☆25Updated 6 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- ☆40Updated 5 months ago
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆73Updated last year
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆34Updated 8 months ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- ☆30Updated 5 months ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated last week
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- ☆12Updated 3 years ago